Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7K00_h
|
7K00_a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| h:11 [ASN] | a:2094 [A] | 3.93 | a:2195 [U] | 38.9 | ||
| h:11 [ASN] | a:2095 [A] | 3.23 | a:2194 [U] | 38.9 | ||
| h:11 [ASN] | a:2096 [C] | 4.53 | a:2193 [G] | 38.9 | ||
| h:22 [LYS] | a:2093 [G] | 3.82 | a:2196 [C] | 60.53 | ||
| h:22 [LYS] | a:2094 [A] | 2.67 | a:2195 [U] | 60.53 | ||
| h:23 [ALA] | a:2093 [G] | 3.95 | a:2196 [C] | 37.48 | ||
| h:24 [GLY] | a:2092 [U] | 4.0 | a:2227 [A] | 95.05 | ||
| h:24 [GLY] | a:2093 [G] | 2.95 | a:2196 [C] | 95.05 | ||
| h:24 [GLY] | a:2198 [A] | 4.32 | 95.05 | |||
| h:25 [TYR] | a:2093 [G] | 3.45 | a:2196 [C] | 69.77 | ||
| h:25 [TYR] | a:2094 [A] | 3.31 | a:2195 [U] | 69.77 | ||
| h:25 [TYR] | a:2198 [A] | 3.72 | 69.77 | |||
| h:27 [ARG] | a:2091 [C] | 4.13 | a:2228 [G] | 67.72 | ||
| h:27 [ARG] | a:2092 [U] | 3.01 | a:2227 [A] | 67.72 | ||
| h:27 [ARG] | a:2093 [G] | 4.77 | a:2196 [C] | 67.72 | ||
| h:28 [ASN] | a:2092 [U] | 2.95 | a:2227 [A] | 99.0 | ||
| h:28 [ASN] | a:2198 [A] | 3.78 | 99.0 | |||
| h:28 [ASN] | a:2199 [A] | 3.17 | a:2224 [G] | 99.0 | ||
| h:28 [ASN] | a:2225 [A] | 4.92 | a:2197 [U] | 99.0 | ||
| h:29 [PHE] | a:2197 [U] | 4.83 | a:2225 [A] | 68.21 | ||
| h:29 [PHE] | a:2198 [A] | 3.36 | base/AA stacks | 68.21 | ||
| h:33 [GLN] | a:2198 [A] | 3.7 | 55.1 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group44 | 7K00_h_a | h: 50s ribosomal protein l9, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) | P0A7R1 | L9 N-domain-like | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 7K00_h_a | 7RYG_H_A | 0.97 | 0.98 | 2.02 | 1.0 | L9 N-domain-like | Bacterial large subunit ribosomal RNA | compare |
| 4Y4O_1I_1A | 7K00_h_a | 0.88 | 0.96 | 2.81 | 0.56 | L9 N-domain-like | Bacterial large subunit ribosomal RNA | compare |