Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 4Y4O_1O
|
4Y4O_1a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| 1O:13 [ASN] | 1a:339 [C] | 3.0 | 1a:350 [G] | 98.83 | ||
| 1O:13 [ASN] | 1a:340 [U] | 4.51 | 1a:349 [A] | 98.83 | ||
| 1O:47 [ILE] | 1a:1422 [G] | 4.78 | 1a:1478 [C] | 42.79 | ||
| 1O:48 [PRO] | 1a:1422 [G] | 3.48 | 1a:1478 [C] | 40.9 | ||
| 1O:48 [PRO] | 1a:1423 [G] | 3.61 | 1a:1477 [C] | 40.9 | ||
| 1O:49 [ARG] | 1a:1422 [G] | 2.61 | 1a:1478 [C] | 37.24 | ||
| 1O:49 [ARG] | 1a:1423 [G] | 2.72 | 1a:1477 [C] | 37.24 | ||
| 1O:54 [GLU] | 1a:1421 [G] | 4.66 | 1a:1479 [C] | 76.39 | ||
| 1O:96 [THR] | 1a:339 [C] | 4.54 | 1a:350 [G] | 84.97 | ||
| 1O:96 [THR] | 1a:340 [U] | 2.77 | 1a:349 [A] | 84.97 | ||
| 1O:97 [ARG] | 1a:338 [A] | 3.31 | 1a:351 [G] | 88.5 | ||
| 1O:97 [ARG] | 1a:339 [C] | 2.76 | 1a:350 [G] | 88.5 | ||
| 1O:97 [ARG] | 1a:340 [U] | 4.33 | 1a:349 [A] | 88.5 | ||
| 1O:99 [PHE] | 1a:338 [A] | 3.99 | 1a:351 [G] | 48.59 | ||
| 1O:99 [PHE] | 1a:339 [C] | 4.53 | 1a:350 [G] | 48.59 | ||
| 1O:107 [ARG] | 1a:345 [C] | 4.15 | 75.18 | |||
| 1O:107 [ARG] | 1a:346 [G] | 2.94 | 1a:343 [U] | 75.18 | ||
| 1O:116 [SER] | 1a:345 [C] | 3.68 | 74.64 | |||
| 1O:119 [PRO] | 1a:347 [G] | 4.49 | 1a:342 [C] | 26.07 | ||
| 1O:121 [VAL] | 1a:346 [G] | 4.85 | 1a:343 [U] | 57.99 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group45 | 4Y4O_1O_1a | 1O: 50s ribosomal protein l14, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) | Q5SHP8 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1O_1a | 6S0X_I_a | 0.83 | 0.95 | 3.11 | 0.67 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1O_1a | 7K00_j_A | 0.63 | 0.98 | 1.83 | 0.75 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | compare |