Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6S0X_I
|
6S0X_a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| I:13 [ASN] | a:347 [C] | 3.46 | a:358 [G] | 98.79 | ||
| I:13 [ASN] | a:348 [U] | 4.9 | a:357 [A] | 98.79 | ||
| I:17 [ARG] | a:1483 [U] | 4.09 | a:1438 [A] | 56.88 | ||
| I:47 [THR] | a:1432 [U] | 4.69 | a:1489 [A] | 27.57 | ||
| I:48 [PRO] | a:1432 [U] | 3.44 | a:1489 [A] | 47.4 | ||
| I:48 [PRO] | a:1433 [G] | 3.81 | a:1488 [C] | 47.4 | ||
| I:49 [GLY] | a:1432 [U] | 3.43 | a:1489 [A] | 36.27 | ||
| I:49 [GLY] | a:1433 [G] | 4.54 | a:1488 [C] | 36.27 | ||
| I:53 [LYS] | a:1432 [U] | 3.93 | a:1489 [A] | 76.59 | ||
| I:54 [LYS] | a:1431 [U] | 4.06 | a:1490 [A] | 74.14 | ||
| I:96 [THR] | a:348 [U] | 3.13 | a:357 [A] | 81.88 | ||
| I:97 [ARG] | a:345 [G] | 4.9 | a:324 [C] | 88.32 | ||
| I:97 [ARG] | a:346 [A] | 2.87 | a:359 [G] | 88.32 | ||
| I:97 [ARG] | a:347 [C] | 3.05 | a:358 [G] | 88.32 | ||
| I:99 [PHE] | a:346 [A] | 4.06 | a:359 [G] | 32.42 | ||
| I:104 [ARG] | a:354 [G] | 3.08 | 47.88 | |||
| I:107 [ARG] | a:353 [C] | 2.97 | sugar:SC | 73.39 | ||
| I:107 [ARG] | a:354 [G] | 4.61 | 73.39 | |||
| I:115 [VAL] | a:353 [C] | 4.62 | 38.6 | |||
| I:116 [SER] | a:351 [U] | 4.48 | a:161 [A] | 76.74 | ||
| I:116 [SER] | a:353 [C] | 3.49 | 76.74 | |||
| I:121 [VAL] | a:354 [G] | 4.87 | 57.62 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group45 | 6S0X_I_a | I: 50s ribosomal protein l14, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) | A0A077UUA0 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1O_1a | 6S0X_I_a | 0.83 | 0.95 | 3.11 | 0.67 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_I_a | 7K00_j_A | 0.52 | 0.95 | 3.11 | 0.44 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | compare |