Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
| 6S0X_I
|
6S0X_a
|
7K00_j
|
7K00_A
|
Conserved?
|
|---|---|---|---|---|
| I:121 [VAL] | a:354 [G] | j:122 [VAL] | A:346 [G] | ✔ |
| I:54 [LYS] | a:1431 [U] | j:54 [LYS] | A:1421 [G] | ✔ |
| I:13 [ASN] | a:347 [C] | j:13 [ASN] | A:339 [C] | ✔ |
| I:47 [THR] | a:1432 [U] | j:47 [ILE] | A:1422 [G] | ✔ |
| I:48 [PRO] | a:1432 [U] | j:48 [PRO] | A:1422 [G] | ✔ |
| I:48 [PRO] | a:1433 [G] | j:48 [PRO] | A:1423 [G] | ✔ |
| I:96 [THR] | a:348 [U] | j:98 [ARG] | A:340 [U] | ✔ |
| I:49 [GLY] | a:1432 [U] | j:49 [ARG] | A:1422 [G] | ✔ |
| I:49 [GLY] | a:1433 [G] | j:49 [ARG] | A:1423 [G] | ✔ |
| I:13 [ASN] | a:348 [U] | j:13 [ASN] | A:340 [U] | ❌ 7K00_j_A |
| I:53 [LYS] | a:1432 [U] | j:53 [LYS] | A:1422 [G] | ❌ 7K00_j_A |
| I:99 [PHE] | a:347 [C] | j:100 [PHE] | A:339 [C] | ❌ 6S0X_I_a |
| I:53 [LYS] | a:1431 [U] | j:53 [LYS] | A:1421 [G] | ❌ 6S0X_I_a |
| I:96 [THR] | a:347 [C] | j:98 [ARG] | A:339 [C] | ❌ 6S0X_I_a |
| I:99 [PHE] | a:346 [A] | j:100 [PHE] | A:338 [A] | ❌ 7K00_A:338 no longer at interface |
| I:115 [VAL] | a:353 [C] | j:116 [ILE] | A:345 [C] | ❌ 7K00_j:116, 7K00_A:345 no longer at interface |
| I:116 [SER] | a:351 [U] | j:117 [SER] | A:343 [U] | ❌ 7K00_j:117, 7K00_A:343 no longer at interface |
| I:116 [SER] | a:353 [C] | j:117 [SER] | A:345 [C] | ❌ 7K00_j:117, 7K00_A:345 no longer at interface |
| I:107 [ARG] | a:353 [C] | j:107 [LEU] | A:345 [C] | ❌ 7K00_j:107, 7K00_A:345 no longer at interface |
| I:17 [ARG] | a:1483 [U] | j:17 [ARG] | A:1472 [U] | ❌ 7K00_A:1472 no longer at interface |
| I:119 [PRO] | a:355 [G] | j:120 [PRO] | A:347 [G] | ❌ 6S0X_I:119, 6S0X_a:355 no longer at interface |
| I:120 [GLU] | a:355 [G] | j:121 [GLU] | A:347 [G] | ❌ 6S0X_I:120, 6S0X_a:355 no longer at interface |
| I:17 [ARG] | a:1482 [G] | j:17 [ARG] | A:1471 [U] | ❌ 6S0X_a:1482 no longer at interface |
| I:96 [THR] | a:349 [C] | j:98 [ARG] | A:341 [C] | ❌ 6S0X_a:349 no longer at interface |
| I:107 [ARG] | a:354 [G] | j:107 [LEU] | A:346 [G] | ❌ 7K00_j:107 no longer at interface |
| I:120 [GLU] | a:354 [G] | j:121 [GLU] | A:346 [G] | ❌ 6S0X_I:120 no longer at interface |
| I:46 [ALA] | a:1432 [U] | j:46 [ALA] | A:1422 [G] | ❌ 6S0X_I:46 no longer at interface |
| I:95 [GLY] | a:348 [U] | j:97 [THR] | A:340 [U] | ❌ 6S0X_I:95 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | 0.95 | 3.11 | 0.44 | 0.95 | 0.95 | 0.71 | 0.67 | 0.52 | 0.36 | 0.50 | 0.74 |
Other pairs involving 6S0X_I_a or 7K00_j_A
Total number of entries: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1O_1a | 6S0X_I_a | 0.83 | 0.95 | 3.11 | 0.67 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | compare |
| 4Y4O_1O_1a | 7K00_j_A | 0.63 | 0.98 | 1.83 | 0.75 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_I_a | 7K00_j_A | 0.52 | 0.95 | 3.11 | 0.44 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | compare |