Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7K00_j
|
7K00_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| j:13 [ASN] | A:339 [C] | 3.39 | A:350 [G] | 99.0 | ||
| j:17 [ARG] | A:1471 [U] | 4.52 | A:1429 [A] | 54.5 | ||
| j:46 [ALA] | A:1422 [G] | 4.18 | A:1478 [U] | 58.4 | ||
| j:47 [ILE] | A:1422 [G] | 4.73 | A:1478 [U] | 33.3 | ||
| j:48 [PRO] | A:1422 [G] | 3.38 | A:1478 [U] | 56.8 | ||
| j:48 [PRO] | A:1423 [G] | 4.19 | A:1477 [U] | 56.8 | ||
| j:49 [ARG] | A:1422 [G] | 2.77 | A:1478 [U] | sugar:SC | 38.1 | |
| j:49 [ARG] | A:1423 [G] | 2.54 | A:1477 [U] | 38.1 | ||
| j:53 [LYS] | A:1421 [G] | 4.8 | A:1479 [C] | 66.0 | ||
| j:54 [LYS] | A:1421 [G] | 4.11 | A:1479 [C] | 77.9 | ||
| j:97 [THR] | A:340 [U] | 4.33 | A:349 [A] | 87.3 | ||
| j:98 [ARG] | A:339 [C] | 4.44 | A:350 [G] | 88.5 | ||
| j:98 [ARG] | A:340 [U] | 2.34 | A:349 [A] | 88.5 | ||
| j:98 [ARG] | A:341 [C] | 3.21 | A:348 [G] | 88.5 | ||
| j:100 [PHE] | A:339 [C] | 4.51 | A:350 [G] | 19.0 | ||
| j:120 [PRO] | A:347 [G] | 4.75 | A:342 [C] | 41.8 | ||
| j:121 [GLU] | A:346 [G] | 3.9 | A:343 [U] | 5.2 | ||
| j:121 [GLU] | A:347 [G] | 4.89 | A:342 [C] | 5.2 | ||
| j:122 [VAL] | A:346 [G] | 4.25 | A:343 [U] | 50.4 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group45 | 7K00_j_A | j: 50s ribosomal protein l14, Escherichia coli (natural) A: 16s rRNA, Escherichia coli (natural) | P0ADY3 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1O_1a | 7K00_j_A | 0.63 | 0.98 | 1.83 | 0.75 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | compare |
| 6S0X_I_a | 7K00_j_A | 0.52 | 0.95 | 3.11 | 0.44 | Ribosomal protein L14-related | Bacterial small subunit ribosomal RNA | compare |