Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6FQL_A
|
6FQL_B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:555 [GLU] | B:6 [U] | 4.61 | 0.0 | |||
| A:563 [CYS] | B:6 [U] | 3.2 | 0.0 | |||
| A:564 [ARG] | B:6 [U] | 3.54 | 0.0 | |||
| A:564 [ARG] | B:8 [A] | 2.94 | 0.0 | |||
| A:581 [ARG] | B:8 [A] | 2.85 | 0.0 | |||
| A:582 [SER] | B:6 [U] | 2.88 | 0.0 | |||
| A:582 [SER] | B:8 [A] | 4.66 | 0.0 | |||
| A:611 [ARG] | B:6 [U] | 2.76 | sugar:SC | 0.0 | ||
| A:611 [ARG] | B:7 [U] | 3.31 | 0.0 | |||
| A:611 [ARG] | B:8 [A] | 2.52 | 0.0 | |||
| A:628 [LYS] | B:7 [U] | 3.19 | 0.0 | |||
| A:628 [LYS] | B:8 [A] | 2.77 | 0.0 | |||
| A:629 [ASP] | B:7 [U] | 2.6 | sugar:SC | 0.0 | ||
| A:658 [TYR] | B:7 [U] | 3.47 | base/AA stacks | 0.0 | ||
| A:660 [TRP] | B:8 [A] | 4.15 | 0.0 | |||
| A:660 [TRP] | B:9 [A] | 3.38 | B:5 [U] | 0.0 | ||
| A:676 [ARG] | B:7 [U] | 2.81 | base:SC, base:SC | 0.0 | ||
| A:707 [ARG] | B:8 [A] | 4.95 | 0.0 | |||
| A:707 [ARG] | B:9 [A] | 2.93 | B:5 [U] | 0.0 | ||
| A:722 [PHE] | B:9 [A] | 3.35 | B:5 [U] | 0.0 | ||
| A:722 [PHE] | B:10 [U] | 4.5 | B:4 [A] | 0.0 | ||
| A:723 [ASN] | B:9 [A] | 4.93 | B:5 [U] | 0.0 | ||
| A:752 [ARG] | B:9 [A] | 3.37 | B:5 [U] | 0.0 | ||
| A:752 [ARG] | B:10 [U] | 2.98 | B:4 [A] | 0.0 | ||
| A:754 [GLN] | B:9 [A] | 3.72 | B:5 [U] | 0.0 | ||
| A:770 [ARG] | B:10 [U] | 3.07 | B:4 [A] | 0.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group46 | 6FQL_A_B | A: E3 ubiquitin-protein ligase trim71, Danio rerio (genetically engineered) B: Caenorhabditis elegans (synthetic) | E7FAM5 | 6-bladed | ✘ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4ZLR_A_C | 6FQL_A_B | 0.19 | 0.84 | 2.36 | 0.0 | 6-bladed | compare | |
| 6FQ3_A_B | 6FQL_A_B | 0.99 | 1.0 | 0.1 | 0.4 | 6-bladed | compare |