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All interfaces > All interologs > Interface groups > group47 > 5XH7_A_B

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5XH7_A
5XH7_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:14 [SER] B:0 [G] 3.36 C:0 [DC] 84.03
A:15 [LYS] B:0 [G] 2.96 C:0 [DC] 97.56
A:16 [THR] B:0 [G] 2.74 C:0 [DC] base:SC, base:SC, sugar:BB 99.0
A:16 [THR] B:1 [G] 3.22 C:-1 [DC] 99.0
A:18 [ARG] B:-16 [U] 2.95 B:-1 [U] base:SC, base:SC 96.58
A:18 [ARG] B:-15 [U] 3.65 B:-2 [A] 96.58
A:18 [ARG] B:-1 [U] 4.0 B:-16 [U] 96.58
A:18 [ARG] B:1 [G] 3.47 C:-1 [DC] 96.58
A:19 [PHE] B:-16 [U] 3.66 B:-1 [U] 85.78
A:20 [GLU] B:-16 [U] 3.68 B:-1 [U] 85.79
A:47 [TYR] B:3 [A] 3.37 C:-3 [DT] 88.42
A:47 [TYR] B:4 [A] 2.54 C:-4 [DT] 88.42
A:51 [LYS] B:4 [A] 3.68 C:-4 [DT] 98.36
A:51 [LYS] B:5 [U] 2.97 C:-5 [DA] 98.36
A:55 [ASP] B:5 [U] 4.11 C:-5 [DA] 96.64
A:171 [GLY] B:3 [A] 4.44 C:-3 [DT] 79.77
A:172 [PHE] B:3 [A] 4.37 C:-3 [DT] 89.89
A:172 [PHE] B:4 [A] 4.52 C:-4 [DT] 89.89
A:175 [ASN] B:3 [A] 2.4 C:-3 [DT] base:SC, sugar:SC 91.86
A:175 [ASN] B:4 [A] 2.91 C:-4 [DT] 91.86
A:176 [ARG] B:4 [A] 2.95 C:-4 [DT] sugar:SC 98.56
A:176 [ARG] B:5 [U] 3.29 C:-5 [DA] 98.56
A:187 [THR] B:4 [A] 4.54 C:-4 [DT] 92.09
A:187 [THR] B:5 [U] 4.47 C:-5 [DA] 92.09
A:192 [ARG] B:6 [U] 2.9 C:-6 [DA] sugar:SC 98.97
A:192 [ARG] B:7 [A] 3.6 C:-7 [DT] 98.97
A:268 [GLU] B:14 [C] 4.6 C:-14 [DG] 51.19
A:269 [ALA] B:13 [G] 4.4 C:-13 [DC] 50.06
A:269 [ALA] B:14 [C] 3.62 C:-14 [DG] 50.06
A:270 [GLY] B:14 [C] 2.9 C:-14 [DG] sugar:BB 60.29
A:270 [GLY] B:15 [U] 3.77 C:-15 [DA] 60.29
A:271 [THR] B:14 [C] 4.38 C:-14 [DG] 47.03
A:271 [THR] B:15 [U] 3.21 C:-15 [DA] 47.03
A:272 [GLU] B:15 [U] 3.72 C:-15 [DA] 44.09
A:272 [GLU] B:16 [U] 4.11 C:-16 [DA] 44.09
A:273 [LYS] B:15 [U] 3.1 C:-15 [DA] sugar:BB 88.59
A:275 [LYS] B:16 [U] 3.95 C:-16 [DA] 77.08
A:279 [GLU] B:15 [U] 4.51 C:-15 [DA] 80.04
A:283 [LEU] B:16 [U] 3.36 C:-16 [DA] 77.81
A:283 [LEU] B:17 [G] 3.73 C:-17 [DC] 77.81
A:286 [GLN] B:17 [G] 2.74 C:-17 [DC] base:SC, base:SC, sugar:SC 96.33
A:286 [GLN] B:18 [G] 3.24 C:-18 [DC] 96.33
A:288 [ASN] B:18 [G] 4.15 C:-18 [DC] 50.57
A:288 [ASN] B:19 [C] 4.99 C:-19 [DG] 50.57
A:306 [PHE] B:6 [U] 4.77 C:-6 [DA] 69.15
A:306 [PHE] B:7 [A] 3.35 C:-7 [DT] 69.15
A:306 [PHE] B:8 [G] 3.88 C:-8 [DC] 69.15
A:307 [LYS] B:6 [U] 2.66 C:-6 [DA] 98.72
A:307 [LYS] B:7 [A] 2.97 C:-7 [DT] 98.72
A:308 [GLN] B:6 [U] 3.83 C:-6 [DA] 96.47
A:309 [ILE] B:5 [U] 3.74 C:-5 [DA] 98.42
A:309 [ILE] B:6 [U] 3.79 C:-6 [DA] 98.42
A:310 [LEU] B:5 [U] 3.52 C:-5 [DA] 92.28
A:310 [LEU] B:6 [U] 2.91 C:-6 [DA] 92.28
A:311 [SER] B:6 [U] 4.22 C:-6 [DA] 94.61
A:313 [ARG] B:6 [U] 4.96 C:-6 [DA] 71.26
A:313 [ARG] B:7 [A] 2.71 C:-7 [DT] 71.26
A:369 [LYS] B:16 [U] 2.84 C:-16 [DA] 55.09
A:369 [LYS] B:17 [G] 3.78 C:-17 [DC] 55.09
A:370 [LYS] B:15 [U] 4.76 C:-15 [DA] 54.0
A:372 [GLU] B:19 [C] 3.8 C:-19 [DG] 78.95
A:382 [TRP] B:19 [C] 3.43 C:-19 [DG] base/AA stacks 77.06
A:382 [TRP] B:20 [A] 4.58 77.06
A:386 [ARG] B:19 [C] 4.89 C:-19 [DG] 6.25
A:386 [ARG] B:20 [A] 3.23 6.25
A:414 [LYS] B:17 [G] 4.99 C:-17 [DC] 55.95
A:414 [LYS] B:18 [G] 2.69 C:-18 [DC] 55.95
A:414 [LYS] B:19 [C] 3.02 C:-19 [DG] 55.95
A:475 [LEU] B:13 [G] 4.4 C:-13 [DC] 66.18
A:475 [LEU] B:14 [C] 4.79 C:-14 [DG] 66.18
A:478 [TYR] B:14 [C] 4.82 C:-14 [DG] 56.77
A:479 [HIS] B:13 [G] 4.47 C:-13 [DC] 73.9
A:479 [HIS] B:14 [C] 2.68 C:-14 [DG] 73.9
A:511 [LEU] B:13 [G] 3.52 C:-13 [DC] 69.48
A:511 [LEU] B:14 [C] 3.78 C:-14 [DG] 69.48
A:514 [TYR] B:12 [C] 3.8 C:-12 [DG] 94.72
A:514 [TYR] B:13 [G] 3.95 C:-13 [DC] 94.72
A:515 [ASN] B:13 [G] 2.98 C:-13 [DC] sugar:SC 93.5
A:518 [ARG] B:11 [G] 4.27 C:-11 [DC] 98.83
A:518 [ARG] B:12 [C] 2.99 C:-12 [DG] sugar:SC 98.83
A:518 [ARG] B:13 [G] 3.28 C:-13 [DC] sugar:SC 98.83
A:530 [LYS] B:1 [G] 4.93 C:-1 [DC] 98.61
A:530 [LYS] B:2 [A] 2.64 C:-2 [DT] 98.61
A:746 [TYR] B:-16 [U] 3.84 B:-1 [U] 83.08
A:746 [TYR] B:-6 [G] 4.96 B:-11 [C] 83.08
A:747 [ASN] B:-16 [U] 3.32 B:-1 [U] 96.17
A:748 [LYS] B:-17 [U] 2.97 96.64
A:748 [LYS] B:-16 [U] 2.78 B:-1 [U] 96.64
A:748 [LYS] B:-15 [U] 4.38 B:-2 [A] 96.64
A:748 [LYS] B:-14 [C] 4.64 B:-3 [G] 96.64
A:748 [LYS] B:-5 [U] 4.3 B:-12 [A] 96.64
A:748 [LYS] B:-4 [A] 4.69 B:-13 [U] 96.64
A:751 [ALA] B:-6 [G] 3.33 B:-11 [C] 92.59
A:752 [LYS] B:-6 [G] 3.82 B:-11 [C] 30.71
A:753 [GLY] B:-8 [U] 4.84 32.05
A:753 [GLY] B:-7 [U] 4.61 32.05
A:753 [GLY] B:-6 [G] 2.87 B:-11 [C] 32.05
A:753 [GLY] B:-5 [U] 4.39 B:-12 [A] 32.05
A:754 [HIS] B:-6 [G] 3.66 B:-11 [C] 89.09
A:754 [HIS] B:-5 [U] 3.54 B:-12 [A] 89.09
A:755 [HIS] B:-8 [U] 2.84 base:SC 74.93
A:755 [HIS] B:-6 [G] 3.56 B:-11 [C] 74.93
A:755 [HIS] B:-5 [U] 2.81 B:-12 [A] 74.93
A:756 [GLY] B:-5 [U] 2.8 B:-12 [A] 92.0
A:756 [GLY] B:-4 [A] 3.48 B:-13 [U] 92.0
A:757 [LYS] B:-5 [U] 4.69 B:-12 [A] 62.96
A:757 [LYS] B:-4 [A] 2.97 B:-13 [U] 62.96
A:757 [LYS] B:-3 [G] 3.49 B:-14 [C] 62.96
A:758 [PRO] B:-3 [G] 4.67 B:-14 [C] 65.62
A:759 [ASN] B:-16 [U] 3.41 B:-1 [U] base:SC 98.78
A:759 [ASN] B:-15 [U] 3.87 B:-2 [A] 98.78
A:759 [ASN] B:-3 [G] 4.32 B:-14 [C] 98.78
A:759 [ASN] B:-2 [A] 3.21 B:-15 [U] 98.78
A:759 [ASN] B:-1 [U] 3.19 B:-16 [U] 98.78
A:760 [LEU] B:-2 [A] 3.71 B:-15 [U] 88.14
A:760 [LEU] B:-1 [U] 3.27 B:-16 [U] base:BB 88.14
A:761 [HIS] B:-16 [U] 4.26 B:-1 [U] 98.03
A:761 [HIS] B:-1 [U] 2.96 B:-16 [U] base:BB base/AA stacks 98.03
A:761 [HIS] B:0 [G] 2.85 C:0 [DC] 98.03
A:761 [HIS] B:1 [G] 4.57 C:-1 [DC] 98.03
A:762 [THR] B:-1 [U] 4.96 B:-16 [U] 98.83
A:764 [TYR] B:-1 [U] 4.64 B:-16 [U] 97.03
A:764 [TYR] B:0 [G] 4.58 C:0 [DC] 97.03
A:784 [GLN] B:1 [G] 3.36 C:-1 [DC] base:SC 66.15
A:786 [GLU] B:1 [G] 4.94 C:-1 [DC] 96.58
A:786 [GLU] B:2 [A] 3.41 C:-2 [DT] sugar:SC 96.58
A:788 [PHE] B:2 [A] 3.66 C:-2 [DT] 98.75
A:790 [ARG] B:-16 [U] 4.37 B:-1 [U] 98.94
A:790 [ARG] B:-15 [U] 2.82 B:-2 [A] 98.94
A:798 [MET] B:-19 [A] 4.42 32.57
A:800 [HIS] B:-19 [A] 2.78 sugar:SC 92.03
A:806 [MET] B:-19 [A] 3.51 76.17
A:807 [LEU] B:-19 [A] 3.24 40.75
A:807 [LEU] B:-10 [U] 4.66 B:-18 [A] 40.75
A:808 [ASN] B:-19 [A] 3.11 base:SC 81.79
A:808 [ASN] B:-10 [U] 3.58 B:-18 [A] sugar:SC 81.79
A:808 [ASN] B:-9 [C] 2.95 81.79
A:809 [LYS] B:-11 [C] 4.0 B:-6 [G] 78.29
A:809 [LYS] B:-10 [U] 2.77 B:-18 [A] 78.29
A:810 [LYS] B:-11 [C] 3.22 B:-6 [G] 77.21
A:810 [LYS] B:-10 [U] 3.03 B:-18 [A] 77.21
A:814 [GLN] B:-9 [C] 3.54 2.78
A:823 [TYR] B:-19 [A] 3.98 base:SC 71.06
A:850 [ILE] B:-9 [C] 4.37 7.47
A:852 [LYS] B:-19 [A] 3.64 58.5
A:852 [LYS] B:-10 [U] 3.44 B:-18 [A] 58.5
A:852 [LYS] B:-9 [C] 2.66 58.5
A:852 [LYS] B:-8 [U] 2.93 58.5
A:855 [SER] B:-7 [U] 4.15 7.33
A:856 [HIS] B:-18 [A] 3.41 B:-10 [U] 76.39
A:856 [HIS] B:-7 [U] 3.26 base/AA stacks 76.39
A:858 [ILE] B:-19 [A] 3.24 83.63
A:858 [ILE] B:-18 [A] 3.58 B:-10 [U] 83.63
A:859 [ILE] B:-19 [A] 4.74 77.85
A:859 [ILE] B:-18 [A] 3.08 B:-10 [U] 77.85
A:859 [ILE] B:-17 [U] 4.77 77.85
A:860 [LYS] B:-19 [A] 3.92 92.56
A:860 [LYS] B:-18 [A] 3.78 B:-10 [U] 92.56
A:861 [ASP] B:-18 [A] 4.26 B:-10 [U] 89.06
A:861 [ASP] B:-17 [U] 4.26 89.06
A:862 [ARG] B:-18 [A] 3.64 B:-10 [U] 76.72
A:862 [ARG] B:-17 [U] 2.73 76.72
A:863 [ARG] B:-18 [A] 4.39 B:-10 [U] 98.81
A:863 [ARG] B:-17 [U] 2.88 base/AA stacks 98.81
A:863 [ARG] B:-15 [U] 3.32 B:-2 [A] 98.81
A:863 [ARG] B:-14 [C] 2.83 B:-3 [G] 98.81
A:864 [PHE] B:-15 [U] 4.19 B:-2 [A] 73.94
A:864 [PHE] B:-14 [C] 3.58 B:-3 [G] 73.94
A:870 [PHE] B:-16 [U] 3.24 B:-1 [U] 73.29
A:870 [PHE] B:-15 [U] 3.81 B:-2 [A] 73.29
A:872 [HIS] B:1 [G] 2.77 C:-1 [DC] sugar:SC 96.58
A:872 [HIS] B:2 [A] 3.5 C:-2 [DT] 96.58
A:874 [PRO] B:0 [G] 3.94 C:0 [DC] 94.53
A:938 [PHE] B:-12 [A] 3.22 B:-5 [U] 72.16
A:938 [PHE] B:-11 [C] 3.74 B:-6 [G] 72.16
A:940 [TYR] B:-13 [U] 2.8 B:-4 [A] sugar:SC 98.19
A:940 [TYR] B:-12 [A] 3.19 B:-5 [U] sugar:SC 98.19
A:943 [LYS] B:-12 [A] 3.82 B:-5 [U] 79.48
A:948 [GLU] B:10 [U] 4.34 C:-10 [DA] 94.06
A:952 [VAL] B:10 [U] 3.83 C:-10 [DA] 44.76
A:952 [VAL] B:11 [G] 3.88 C:-11 [DC] 44.76
A:955 [ARG] B:9 [G] 3.44 C:-9 [DC] 97.11
A:955 [ARG] B:10 [U] 3.23 C:-10 [DA] 97.11
A:955 [ARG] B:11 [G] 3.56 C:-11 [DC] 97.11
A:956 [GLN] B:11 [G] 3.3 C:-11 [DC] 70.37
A:956 [GLN] B:12 [C] 3.04 C:-12 [DG] 70.37
A:966 [ASP] B:-14 [C] 2.87 B:-3 [G] sugar:BB 81.43
A:966 [ASP] B:-13 [U] 3.38 B:-4 [A] 81.43
A:967 [LEU] B:-14 [C] 4.83 B:-3 [G] 90.97
A:967 [LEU] B:-13 [U] 3.75 B:-4 [A] 90.97
A:967 [LEU] B:-12 [A] 4.15 B:-5 [U] 90.97
A:969 [GLN] B:-14 [C] 4.56 B:-3 [G] 75.37
A:970 [GLY] B:-14 [C] 4.15 B:-3 [G] 98.75
A:970 [GLY] B:-13 [U] 3.32 B:-4 [A] 98.75
A:970 [GLY] B:-3 [G] 4.94 B:-14 [C] 98.75
A:971 [TYR] B:-13 [U] 4.18 B:-4 [A] 97.25
A:973 [SER] B:-3 [G] 3.28 B:-14 [C] base:SC 98.97
A:973 [SER] B:-2 [A] 3.17 B:-15 [U] 98.97
A:974 [GLN] B:-13 [U] 4.56 B:-4 [A] 75.63
A:974 [GLN] B:-4 [A] 4.61 B:-13 [U] 75.63
A:974 [GLN] B:-3 [G] 4.27 B:-14 [C] 75.63
A:976 [ILE] B:-2 [A] 4.58 B:-15 [U] 86.74
A:977 [HIS] B:-3 [G] 3.19 B:-14 [C] 91.22
A:977 [HIS] B:-2 [A] 4.35 B:-15 [U] 91.22
A:1018 [MET] B:-2 [A] 4.71 B:-15 [U] 0.0
A:1018 [MET] B:-1 [U] 4.96 B:-16 [U] 0.0
A:1022 [LYS] B:-2 [A] 4.23 B:-15 [U] 0.0
A:1022 [LYS] B:-1 [U] 2.66 B:-16 [U] 0.0
A:1027 [VAL] B:-2 [A] 4.79 B:-15 [U] 0.0
A:1029 [LYS] B:-3 [G] 2.75 B:-14 [C] 0.0
A:1029 [LYS] B:-2 [A] 3.3 B:-15 [U] 0.0
A:1030 [ASP] B:-3 [G] 4.75 B:-14 [C] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group47 5XH7_A_B A: Crispr-associated endonuclease cpf1, Acidaminococcus sp. (strain bv3l6) (genetically engineered) B: crRNA, Acidaminococcus sp. bv3l6 (synthetic) U2UMQ6 CRISPR-associated endonuclease Cpf1 first helical domain & CRISPR-associated endonuclease Cpf1 second helical domain & Small protein B (SmpB) & Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5XH6_A_B 5XH7_A_B 1.00 1.0 0.13 0.53 CRISPR-associated endonuclease Cpf1 first helical domain & CRISPR-associated endonuclease Cpf1 second helical domain & Small protein B (SmpB) & Ribonuclease H-like compare
5XH7_A_B 5XUT_A_B 0.83 0.9 1.41 0.5 CRISPR-associated endonuclease Cpf1 first helical domain & CRISPR-associated endonuclease Cpf1 second helical domain & Small protein B (SmpB) & Ribonuclease H-like compare