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All interfaces > All interologs > Interface groups > group47 > 5XUT_A_B

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5XUT_A
5XUT_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:14 [SER] B:0 [G] 3.3 C:0 [DC] 84.78
A:15 [LYS] B:0 [G] 2.84 C:0 [DC] 97.94
A:16 [THR] B:0 [G] 2.91 C:0 [DC] base:SC, base:SC, sugar:BB 99.0
A:16 [THR] B:1 [G] 3.08 C:-1 [DC] 99.0
A:18 [ARG] B:-17 [U] 3.01 B:-1 [U] base:SC 95.28
A:18 [ARG] B:-16 [U] 3.96 B:-2 [A] 95.28
A:18 [ARG] B:-1 [U] 4.56 B:-17 [U] 95.28
A:18 [ARG] B:1 [G] 3.41 C:-1 [DC] 95.28
A:19 [PHE] B:-17 [U] 3.45 B:-1 [U] 89.62
A:20 [LYS] B:-17 [U] 3.39 B:-1 [U] 88.75
A:51 [LYS] B:3 [A] 3.19 C:-3 [DT] 98.59
A:51 [LYS] B:4 [A] 2.85 C:-4 [DT] 98.59
A:55 [ASP] B:5 [U] 3.79 C:-5 [DA] 96.39
A:153 [GLY] B:3 [A] 4.93 C:-3 [DT] 79.33
A:154 [PHE] B:3 [A] 4.42 C:-3 [DT] 89.76
A:154 [PHE] B:4 [A] 4.12 C:-4 [DT] 89.76
A:157 [ASN] B:3 [A] 2.71 C:-3 [DT] base:SC, sugar:SC 92.15
A:157 [ASN] B:4 [A] 3.21 C:-4 [DT] 92.15
A:158 [ARG] B:4 [A] 2.84 C:-4 [DT] sugar:SC 98.76
A:158 [ARG] B:5 [U] 3.05 C:-5 [DA] 98.76
A:169 [THR] B:4 [A] 3.98 C:-4 [DT] 92.56
A:169 [THR] B:5 [U] 4.05 C:-5 [DA] 92.56
A:174 [ARG] B:6 [U] 2.98 C:-6 [DA] sugar:SC 98.97
A:174 [ARG] B:7 [A] 3.5 C:-7 [DT] 98.97
A:182 [ARG] B:8 [G] 4.95 C:-8 [DC] 72.48
A:251 [LYS] B:15 [U] 3.75 C:-15 [DA] 87.07
A:253 [LYS] B:16 [U] 3.07 C:-16 [DA] sugar:SC 81.15
A:257 [GLU] B:15 [U] 4.47 C:-15 [DA] 77.25
A:261 [LEU] B:16 [U] 3.77 C:-16 [DA] 76.32
A:261 [LEU] B:17 [G] 3.58 C:-17 [DC] 76.32
A:264 [GLN] B:17 [G] 2.88 C:-17 [DC] base:SC, base:SC, sugar:SC 94.62
A:264 [GLN] B:18 [G] 3.22 C:-18 [DC] 94.62
A:265 [LYS] B:18 [G] 4.85 C:-18 [DC] 67.97
A:267 [LYS] B:18 [G] 4.26 C:-18 [DC] 37.95
A:267 [LYS] B:19 [C] 2.82 C:-19 [DG] 37.95
A:277 [TYR] B:6 [U] 4.77 C:-6 [DA] 67.28
A:277 [TYR] B:7 [A] 3.4 C:-7 [DT] 67.28
A:277 [TYR] B:8 [G] 4.17 C:-8 [DC] 67.28
A:278 [LYS] B:6 [U] 2.59 C:-6 [DA] 98.59
A:278 [LYS] B:7 [A] 2.9 C:-7 [DT] 98.59
A:279 [GLN] B:6 [U] 3.57 C:-6 [DA] 97.67
A:280 [VAL] B:5 [U] 3.66 C:-5 [DA] 98.73
A:280 [VAL] B:6 [U] 3.61 C:-6 [DA] 98.73
A:281 [LEU] B:5 [U] 3.77 C:-5 [DA] 93.78
A:281 [LEU] B:6 [U] 2.96 C:-6 [DA] 93.78
A:282 [SER] B:6 [U] 4.22 C:-6 [DA] 94.81
A:284 [ARG] B:7 [A] 4.1 C:-7 [DT] 73.18
A:339 [LYS] B:17 [G] 4.73 C:-17 [DC] 66.26
A:345 [SER] B:19 [C] 4.3 C:-19 [DG] 80.6
A:355 [TRP] B:19 [C] 3.58 C:-19 [DG] base/AA stacks 76.03
A:359 [ARG] B:19 [C] 4.44 C:-19 [DG] 0.87
A:464 [LYS] B:13 [G] 2.88 C:-13 [DC] 67.07
A:464 [LYS] B:14 [C] 2.44 C:-14 [DG] 67.07
A:467 [GLU] B:14 [C] 4.36 C:-14 [DG] 58.87
A:471 [LYS] B:15 [U] 3.52 C:-15 [DA] 79.72
A:501 [ASP] B:13 [G] 4.46 C:-13 [DC] 64.31
A:501 [ASP] B:14 [C] 3.62 C:-14 [DG] 64.31
A:504 [TYR] B:12 [C] 3.75 C:-12 [DG] 92.64
A:504 [TYR] B:13 [G] 3.86 C:-13 [DC] 92.64
A:505 [ASP] B:13 [G] 2.91 C:-13 [DC] sugar:SC, sugar:SC 93.89
A:505 [ASP] B:14 [C] 4.78 C:-14 [DG] 93.89
A:508 [ARG] B:11 [G] 4.75 C:-11 [DC] 97.7
A:508 [ARG] B:12 [C] 3.17 C:-12 [DG] sugar:SC 97.7
A:508 [ARG] B:13 [G] 3.25 C:-13 [DC] sugar:SC 97.7
A:520 [LYS] B:2 [A] 2.84 C:-2 [DT] 98.81
A:705 [TYR] B:-17 [U] 4.13 B:-1 [U] 77.81
A:705 [TYR] B:-6 [G] 4.25 B:-12 [C] 77.81
A:706 [ASN] B:-17 [U] 3.06 B:-1 [U] 97.67
A:707 [LYS] B:-18 [U] 3.32 95.22
A:707 [LYS] B:-17 [U] 2.91 B:-1 [U] 95.22
A:707 [LYS] B:-6 [G] 4.59 B:-12 [C] 95.22
A:707 [LYS] B:-5 [U] 3.35 B:-13 [A] base:SC 95.22
A:707 [LYS] B:-4 [A] 4.32 B:-14 [U] 95.22
A:710 [SER] B:-7 [U] 4.75 91.28
A:710 [SER] B:-6 [G] 2.69 B:-12 [C] 91.28
A:712 [LYS] B:-7 [U] 3.43 44.21
A:712 [LYS] B:-6 [G] 3.47 B:-12 [C] 44.21
A:712 [LYS] B:-5 [U] 4.99 B:-13 [A] 44.21
A:713 [SER] B:-6 [G] 4.25 B:-12 [C] 86.15
A:713 [SER] B:-5 [U] 3.44 B:-13 [A] 86.15
A:714 [HIS] B:-9 [A] 2.66 70.27
A:714 [HIS] B:-6 [G] 3.25 B:-12 [C] 70.27
A:714 [HIS] B:-5 [U] 3.11 B:-13 [A] 70.27
A:715 [GLY] B:-5 [U] 2.87 B:-13 [A] 90.82
A:715 [GLY] B:-4 [A] 3.41 B:-14 [U] 90.82
A:716 [THR] B:-5 [U] 4.77 B:-13 [A] 60.41
A:716 [THR] B:-4 [A] 3.08 B:-14 [U] 60.41
A:716 [THR] B:-3 [G] 3.92 B:-15 [C] 60.41
A:717 [PRO] B:-3 [G] 4.83 B:-15 [C] 57.41
A:718 [ASN] B:-17 [U] 3.52 B:-1 [U] base:SC 98.76
A:718 [ASN] B:-16 [U] 3.98 B:-2 [A] 98.76
A:718 [ASN] B:-3 [G] 4.46 B:-15 [C] 98.76
A:718 [ASN] B:-2 [A] 3.16 B:-16 [U] 98.76
A:718 [ASN] B:-1 [U] 3.32 B:-17 [U] 98.76
A:719 [LEU] B:-2 [A] 4.76 B:-16 [U] 85.53
A:719 [LEU] B:-1 [U] 3.32 B:-17 [U] base:BB 85.53
A:720 [HIS] B:-17 [U] 4.56 B:-1 [U] 97.75
A:720 [HIS] B:-1 [U] 2.99 B:-17 [U] base:BB base/AA stacks 97.75
A:720 [HIS] B:0 [G] 2.97 C:0 [DC] 97.75
A:721 [THR] B:-1 [U] 4.95 B:-17 [U] 98.48
A:743 [GLU] B:1 [G] 4.71 C:-1 [DC] 97.99
A:743 [GLU] B:2 [A] 3.5 C:-2 [DT] sugar:SC 97.99
A:745 [PHE] B:2 [A] 3.96 C:-2 [DT] 98.84
A:747 [ARG] B:-17 [U] 4.43 B:-1 [U] 98.97
A:747 [ARG] B:-16 [U] 2.9 B:-2 [A] 98.97
A:757 [VAL] B:-20 [A] 4.33 24.92
A:759 [HIS] B:-20 [A] 3.08 base/AA stacks 91.77
A:765 [ILE] B:-20 [A] 3.37 74.11
A:766 [ALA] B:-20 [A] 3.02 base:BB 50.73
A:766 [ALA] B:-11 [U] 4.77 B:-19 [A] 50.73
A:767 [ASN] B:-20 [A] 2.99 base:SC 79.4
A:767 [ASN] B:-11 [U] 3.21 B:-19 [A] sugar:SC 79.4
A:767 [ASN] B:-10 [A] 3.79 79.4
A:768 [LYS] B:-12 [C] 4.51 B:-6 [G] 78.8
A:768 [LYS] B:-11 [U] 2.81 B:-19 [A] 78.8
A:769 [ASN] B:-12 [C] 3.79 B:-6 [G] 80.91
A:769 [ASN] B:-11 [U] 3.12 B:-19 [A] 80.91
A:769 [ASN] B:-10 [A] 4.74 80.91
A:772 [ASN] B:-11 [U] 3.4 B:-19 [A] 69.77
A:772 [ASN] B:-10 [A] 3.05 69.77
A:774 [LYS] B:-11 [U] 4.4 B:-19 [A] 69.23
A:774 [LYS] B:-10 [A] 2.79 69.23
A:774 [LYS] B:-9 [A] 4.03 69.23
A:774 [LYS] B:-8 [G] 2.71 base:SC 69.23
A:777 [THR] B:-20 [A] 4.29 70.9
A:777 [THR] B:-11 [U] 2.79 B:-19 [A] sugar:SC 70.9
A:777 [THR] B:-10 [A] 3.45 70.9
A:777 [THR] B:-8 [G] 3.57 70.9
A:778 [THR] B:-8 [G] 4.57 58.3
A:779 [LEU] B:-20 [A] 4.68 67.23
A:779 [LEU] B:-19 [A] 4.09 B:-11 [U] 67.23
A:779 [LEU] B:-8 [G] 3.57 67.23
A:780 [SER] B:-8 [G] 4.55 28.78
A:781 [TYR] B:-19 [A] 2.69 B:-11 [U] base:SC 76.56
A:781 [TYR] B:-8 [G] 3.77 76.56
A:781 [TYR] B:-7 [U] 3.19 base/AA stacks 76.56
A:783 [VAL] B:-20 [A] 4.36 87.95
A:783 [VAL] B:-19 [A] 4.21 B:-11 [U] 87.95
A:784 [TYR] B:-20 [A] 4.01 78.69
A:784 [TYR] B:-19 [A] 2.91 B:-11 [U] 78.69
A:785 [LYS] B:-20 [A] 3.5 90.85
A:785 [LYS] B:-19 [A] 3.73 B:-11 [U] 90.85
A:786 [ASP] B:-20 [A] 4.96 87.9
A:786 [ASP] B:-19 [A] 3.37 B:-11 [U] 87.9
A:786 [ASP] B:-18 [U] 4.17 87.9
A:787 [LYS] B:-19 [A] 4.08 B:-11 [U] 77.02
A:787 [LYS] B:-18 [U] 3.53 77.02
A:787 [LYS] B:-7 [U] 3.81 base:SC 77.02
A:788 [ARG] B:-19 [A] 4.36 B:-11 [U] 98.92
A:788 [ARG] B:-18 [U] 2.95 base/AA stacks 98.92
A:788 [ARG] B:-16 [U] 3.2 B:-2 [A] 98.92
A:788 [ARG] B:-15 [C] 2.67 B:-3 [G] 98.92
A:789 [PHE] B:-16 [U] 4.45 B:-2 [A] 74.94
A:789 [PHE] B:-15 [C] 3.55 B:-3 [G] 74.94
A:793 [GLN] B:-17 [U] 3.2 B:-1 [U] 94.41
A:793 [GLN] B:-16 [U] 3.14 B:-2 [A] 94.41
A:795 [GLU] B:-17 [U] 4.48 B:-1 [U] 70.83
A:795 [GLU] B:2 [A] 4.95 C:-2 [DT] 70.83
A:797 [HIS] B:1 [G] 2.85 C:-1 [DC] sugar:SC 97.26
A:797 [HIS] B:2 [A] 3.35 C:-2 [DT] 97.26
A:799 [PRO] B:0 [G] 4.2 C:0 [DC] 94.41
A:863 [PHE] B:-10 [A] 3.93 22.85
A:863 [PHE] B:-5 [U] 3.53 B:-13 [A] 22.85
A:863 [PHE] B:-4 [A] 3.51 B:-14 [U] 22.85
A:864 [ASN] B:-10 [A] 3.6 sugar:SC 58.51
A:864 [ASN] B:-9 [A] 3.8 58.51
A:864 [ASN] B:-5 [U] 4.95 B:-13 [A] 58.51
A:866 [ILE] B:-10 [A] 3.67 30.11
A:866 [ILE] B:-9 [A] 4.5 30.11
A:868 [ILE] B:-13 [A] 3.5 B:-5 [U] 17.94
A:868 [ILE] B:-12 [C] 4.13 B:-6 [G] 17.94
A:868 [ILE] B:-10 [A] 3.97 17.94
A:870 [THR] B:-13 [A] 3.27 B:-5 [U] sugar:SC 69.84
A:872 [TYR] B:-14 [U] 2.7 B:-4 [A] sugar:SC 98.43
A:872 [TYR] B:-13 [A] 3.25 B:-5 [U] sugar:SC 98.43
A:875 [LEU] B:-13 [A] 3.88 B:-5 [U] 76.29
A:884 [PHE] B:10 [U] 4.81 C:-10 [DA] 46.26
A:884 [PHE] B:11 [G] 3.58 C:-11 [DC] 46.26
A:887 [ARG] B:9 [G] 4.56 C:-9 [DC] 96.26
A:887 [ARG] B:10 [U] 2.99 C:-10 [DA] sugar:SC 96.26
A:887 [ARG] B:11 [G] 3.31 C:-11 [DC] 96.26
A:888 [GLN] B:11 [G] 3.75 C:-11 [DC] 72.73
A:888 [GLN] B:12 [C] 3.17 C:-12 [DG] 72.73
A:890 [TRP] B:12 [C] 4.91 C:-12 [DG] 96.88
A:898 [GLU] B:-15 [C] 3.28 B:-3 [G] sugar:BB 79.21
A:898 [GLU] B:-14 [U] 3.51 B:-4 [A] 79.21
A:899 [LEU] B:-14 [U] 3.51 B:-4 [A] 90.82
A:899 [LEU] B:-13 [A] 3.81 B:-5 [U] 90.82
A:901 [ALA] B:-15 [C] 4.77 B:-3 [G] 72.12
A:902 [GLY] B:-15 [C] 4.44 B:-3 [G] 98.84
A:902 [GLY] B:-14 [U] 3.43 B:-4 [A] 98.84
A:903 [TYR] B:-14 [U] 4.19 B:-4 [A] 97.64
A:905 [SER] B:-3 [G] 3.6 B:-15 [C] base:SC 99.0
A:905 [SER] B:-2 [A] 3.26 B:-16 [U] 99.0
A:906 [GLN] B:-14 [U] 4.44 B:-4 [A] 74.69
A:906 [GLN] B:-4 [A] 4.66 B:-14 [U] 74.69
A:906 [GLN] B:-3 [G] 4.3 B:-15 [C] 74.69
A:909 [HIS] B:-3 [G] 3.36 B:-15 [C] 91.01
A:909 [HIS] B:-2 [A] 3.94 B:-16 [U] 91.01
A:933 [ASN] B:8 [G] 2.98 C:-8 [DC] sugar:SC 89.41
A:933 [ASN] B:9 [G] 3.58 C:-9 [DC] 89.41
A:936 [VAL] B:8 [G] 5.0 C:-8 [DC] 67.46
A:936 [VAL] B:9 [G] 3.64 C:-9 [DC] 67.46
A:937 [LYS] B:9 [G] 3.9 C:-9 [DC] 88.95
A:937 [LYS] B:10 [U] 3.57 C:-10 [DA] 88.95
A:949 [MET] B:-2 [A] 4.2 B:-16 [U] 88.27
A:949 [MET] B:-1 [U] 4.85 B:-17 [U] 88.27
A:953 [LYS] B:-2 [A] 3.92 B:-16 [U] 98.95
A:953 [LYS] B:-1 [U] 2.78 B:-17 [U] 98.95
A:958 [VAL] B:-2 [A] 4.32 B:-16 [U] 90.52
A:960 [LYS] B:-3 [G] 2.85 B:-15 [C] 95.01
A:960 [LYS] B:-2 [A] 3.22 B:-16 [U] 95.01
A:961 [LYS] B:-3 [G] 3.87 B:-15 [C] 70.48

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group47 5XUT_A_B A: Lbcpf1, Lachnospiraceae bacterium nd2006 (genetically engineered) B: crRNA, Synthetic construct (synthetic) A0A182DWE3 CRISPR-associated endonuclease Cpf1 first helical domain & CRISPR-associated endonuclease Cpf1 second helical domain & Small protein B (SmpB) & Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5XH6_A_B 5XUT_A_B 0.82 0.9 1.42 0.5 CRISPR-associated endonuclease Cpf1 first helical domain & CRISPR-associated endonuclease Cpf1 second helical domain & Small protein B (SmpB) & Ribonuclease H-like compare
5XH7_A_B 5XUT_A_B 0.83 0.9 1.41 0.5 CRISPR-associated endonuclease Cpf1 first helical domain & CRISPR-associated endonuclease Cpf1 second helical domain & Small protein B (SmpB) & Ribonuclease H-like compare