Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_F
|
6AZ3_1
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| F:20 [SER] | 1:577 [C] | 4.76 | 1:629 [G] | 56.5 | ||
| F:20 [SER] | 1:578 [G] | 2.8 | 1:628 [C] | 56.5 | ||
| F:26 [TYR] | 1:495 [C] | 3.66 | 1:567 [G] | 29.7 | ||
| F:26 [TYR] | 1:496 [C] | 3.3 | 1:566 [G] | 29.7 | ||
| F:28 [THR] | 1:494 [A] | 4.39 | 1:568 [U] | 52.4 | ||
| F:28 [THR] | 1:495 [C] | 3.31 | 1:567 [G] | 52.4 | ||
| F:60 [ASN] | 1:494 [A] | 3.41 | 1:568 [U] | 83.8 | ||
| F:60 [ASN] | 1:495 [C] | 3.63 | 1:567 [G] | 83.8 | ||
| F:78 [ARG] | 1:643 [U] | 4.72 | 1:491 [A] | 96.3 | ||
| F:78 [ARG] | 1:644 [G] | 4.73 | 1:490 [C] | 96.3 | ||
| F:80 [ASP] | 1:492 [G] | 4.27 | 1:642 [U] | 74.0 | ||
| F:80 [ASP] | 1:493 [A] | 3.67 | 1:641 [G] | 74.0 | ||
| F:82 [ARG] | 1:493 [A] | 3.57 | 1:641 [G] | 55.2 | ||
| F:82 [ARG] | 1:494 [A] | 2.77 | 1:568 [U] | 55.2 | ||
| F:82 [ARG] | 1:560 [G] | 4.85 | 1:500 [C] | 55.2 | ||
| F:83 [TYR] | 1:492 [G] | 3.13 | 1:642 [U] | 66.8 | ||
| F:83 [TYR] | 1:493 [A] | 4.27 | 1:641 [G] | 66.8 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group48 | 6AZ3_F_1 | F: Ribosomal protein el6, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) | SH3 | Eukaryotic large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6AZ3_F_1 | 7O7Y_BE_B5 | 0.26 | 0.92 | 2.11 | 0.12 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |