Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_F
|
6AZ3_6
|
7O7Y_BE
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
F:154 [GLN] | 6:60 [A] | BE:253 [GLN] | B5:4677 [A] | ✔ |
F:78 [ARG] | 6:63 [A] | BE:191 [ARG] | B5:4679 [C] | ✔ |
F:78 [ARG] | 6:64 [U] | BE:191 [ARG] | B5:4680 [G] | ✔ |
F:181 [VAL] | 6:49 [C] | BE:277 [VAL] | B5:4622 [C] | ✔ |
F:45 [ARG] | 6:61 [U] | BE:159 [ARG] | B5:4678 [C] | ✔ |
F:45 [ARG] | 6:65 [C] | BE:159 [ARG] | B5:4681 [C] | ✔ |
F:77 [ARG] | 6:61 [U] | BE:190 [ARG] | B5:4678 [C] | ✔ |
F:77 [ARG] | 6:63 [A] | BE:190 [ARG] | B5:4679 [C] | ✔ |
F:77 [ARG] | 6:64 [U] | BE:190 [ARG] | B5:4680 [G] | ✔ |
F:77 [ARG] | 6:65 [C] | BE:190 [ARG] | B5:4681 [C] | ✔ |
F:173 [GLU] | 6:53 [U] | BE:269 [GLN] | B5:4669 [C] | ✔ |
F:73 [GLY] | 6:59 [C] | BE:186 [ARG] | B5:4676 [C] | ✔ |
F:184 [VAL] | 6:11 [G] | BE:280 [LEU] | B5:4501 [G] | ✔ |
F:180 [SER] | 6:49 [C] | BE:276 [SER] | B5:4622 [C] | ✔ |
F:151 [ALA] | 6:60 [A] | BE:250 [LYS] | B5:4677 [A] | ✔ |
F:62 [PRO] | 6:64 [U] | BE:175 [LEU] | B5:4680 [G] | ✔ |
F:44 [GLY] | 6:65 [C] | BE:158 [GLY] | B5:4681 [C] | ✔ |
F:44 [GLY] | 6:66 [A] | BE:158 [GLY] | B5:4682 [A] | ✔ |
F:166 [LYS] | 6:55 [U] | BE:265 [LYS] | B5:4671 [U] | ✔ |
F:179 [ARG] | 6:49 [C] | BE:275 [ARG] | B5:4622 [C] | ✔ |
F:179 [ARG] | 6:50 [A] | BE:275 [ARG] | B5:4623 [G] | ✔ |
F:46 [PHE] | 6:60 [A] | BE:160 [HIS] | B5:4677 [A] | ✔ |
F:46 [PHE] | 6:61 [U] | BE:160 [HIS] | B5:4678 [C] | ✔ |
F:43 [ALA] | 6:65 [C] | BE:157 [THR] | B5:4681 [C] | ✔ |
F:43 [ALA] | 6:66 [A] | BE:157 [THR] | B5:4682 [A] | ✔ |
F:80 [ASP] | 6:64 [U] | BE:193 [HIS] | B5:4680 [G] | ✔ |
F:104 [GLU] | 6:64 [U] | BE:220 [PHE] | B5:4680 [G] | ✔ |
F:146 [VAL] | 6:60 [A] | BE:245 [ILE] | B5:4677 [A] | ✔ |
F:75 [PRO] | 6:60 [A] | BE:188 [PRO] | B5:4677 [A] | ✔ |
F:75 [PRO] | 6:61 [U] | BE:188 [PRO] | B5:4678 [C] | ✔ |
F:186 [PRO] | 6:11 [G] | BE:282 [ASN] | B5:4501 [G] | ✔ |
F:69 [MET] | 6:60 [A] | BE:182 [LEU] | B5:4677 [A] | ✔ |
F:105 [VAL] | 6:63 [A] | BE:221 [LYS] | B5:4679 [C] | ✔ |
F:150 [ARG] | 6:60 [A] | BE:249 [ARG] | B5:4677 [A] | ✔ |
F:79 [ILE] | 6:64 [U] | BE:192 [THR] | B5:4680 [G] | ✔ |
F:70 [LYS] | 6:57 [U] | BE:183 [SER] | B5:4673 [A] | ✔ |
F:70 [LYS] | 6:58 [U] | BE:183 [SER] | B5:4674 [C] | ✔ |
F:47 [ARG] | 6:66 [A] | BE:161 [ARG] | B5:4682 [A] | ✔ |
F:47 [ARG] | 6:68 [A] | BE:161 [ARG] | B5:4684 [G] | ✔ |
F:185 [LYS] | 6:47 [G] | BE:281 [THR] | B5:4620 [U] | ✔ |
F:45 [ARG] | 6:59 [C] | BE:159 [ARG] | B5:4676 [C] | ❌ 7O7Y_BE_B5 |
F:45 [ARG] | 6:60 [A] | BE:159 [ARG] | B5:4677 [A] | ❌ 7O7Y_BE_B5 |
F:72 [ASN] | 6:59 [C] | BE:185 [ASN] | B5:4676 [C] | ❌ 7O7Y_BE_B5 |
F:179 [ARG] | 6:56 [A] | BE:275 [ARG] | B5:4672 [C] | ❌ 7O7Y_BE_B5 |
F:46 [PHE] | 6:59 [C] | BE:160 [HIS] | B5:4676 [C] | ❌ 7O7Y_BE_B5 |
F:83 [TYR] | 6:65 [C] | BE:196 [PHE] | B5:4681 [C] | ❌ 7O7Y_BE_B5 |
F:146 [VAL] | 6:61 [U] | BE:245 [ILE] | B5:4678 [C] | ❌ 7O7Y_BE_B5 |
F:186 [PRO] | 6:47 [G] | BE:282 [ASN] | B5:4620 [U] | ❌ 7O7Y_BE_B5 |
F:69 [MET] | 6:59 [C] | BE:182 [LEU] | B5:4676 [C] | ❌ 7O7Y_BE_B5 |
F:150 [ARG] | 6:61 [U] | BE:249 [ARG] | B5:4678 [C] | ❌ 7O7Y_BE_B5 |
F:71 [TYR] | 6:50 [A] | BE:184 [LEU] | B5:4623 [G] | ❌ 7O7Y_BE_B5 |
F:71 [TYR] | 6:59 [C] | BE:184 [LEU] | B5:4676 [C] | ❌ 7O7Y_BE_B5 |
F:70 [LYS] | 6:59 [C] | BE:183 [SER] | B5:4676 [C] | ❌ 7O7Y_BE_B5 |
F:172 [LYS] | 6:55 [U] | BE:268 [PRO] | B5:4671 [U] | ❌ 7O7Y_BE_B5 |
F:45 [ARG] | 6:63 [A] | BE:159 [ARG] | B5:4679 [C] | ❌ 6AZ3_F_6 |
F:70 [LYS] | 6:50 [A] | BE:183 [SER] | B5:4623 [G] | ❌ 6AZ3_F_6 |
F:70 [LYS] | 6:49 [C] | BE:183 [SER] | B5:4622 [C] | ❌ 6AZ3_F_6 |
F:71 [TYR] | 6:49 [C] | BE:184 [LEU] | B5:4622 [C] | ❌ 6AZ3_F_6 |
F:72 [ASN] | 6:49 [C] | BE:185 [ASN] | B5:4622 [C] | ❌ 6AZ3_F_6 |
F:73 [GLY] | 6:49 [C] | BE:186 [ARG] | B5:4622 [C] | ❌ 6AZ3_F_6 |
F:73 [GLY] | 6:60 [A] | BE:186 [ARG] | B5:4677 [A] | ❌ 6AZ3_F_6 |
F:83 [TYR] | 6:64 [U] | BE:196 [PHE] | B5:4680 [G] | ❌ 6AZ3_F_6 |
F:104 [GLU] | 6:63 [A] | BE:220 [PHE] | B5:4679 [C] | ❌ 6AZ3_F_6 |
F:146 [VAL] | 6:59 [C] | BE:245 [ILE] | B5:4676 [C] | ❌ 6AZ3_F_6 |
F:150 [ARG] | 6:63 [A] | BE:249 [ARG] | B5:4679 [C] | ❌ 6AZ3_F_6 |
F:166 [LYS] | 6:56 [A] | BE:265 [LYS] | B5:4672 [C] | ❌ 6AZ3_F_6 |
F:185 [LYS] | 6:11 [G] | BE:281 [THR] | B5:4501 [G] | ❌ 6AZ3_F_6 |
F:181 [VAL] | 6:48 [C] | BE:277 [VAL] | B5:4621 [U] | ❌ 7O7Y_B5:4621 no longer at interface |
F:183 [THR] | 6:48 [C] | BE:279 [ALA] | B5:4621 [U] | ❌ 7O7Y_BE:279, 7O7Y_B5:4621 no longer at interface |
F:182 [PHE] | 6:48 [C] | BE:278 [PHE] | B5:4621 [U] | ❌ 7O7Y_BE:278, 7O7Y_B5:4621 no longer at interface |
F:185 [LYS] | 6:48 [C] | BE:281 [THR] | B5:4621 [U] | ❌ 7O7Y_B5:4621 no longer at interface |
F:171 [GLY] | 6:54 [A] | BE:267 [VAL] | B5:4670 [G] | ❌ 6AZ3_F:171, 6AZ3_6:54 no longer at interface |
F:172 [LYS] | 6:54 [A] | BE:268 [PRO] | B5:4670 [G] | ❌ 6AZ3_6:54 no longer at interface |
F:173 [GLU] | 6:54 [A] | BE:269 [GLN] | B5:4670 [G] | ❌ 6AZ3_6:54 no longer at interface |
F:174 [LYS] | 6:54 [A] | BE:270 [LEU] | B5:4670 [G] | ❌ 6AZ3_F:174, 6AZ3_6:54 no longer at interface |
F:175 [ALA] | 6:54 [A] | BE:271 [GLN] | B5:4670 [G] | ❌ 6AZ3_F:175, 6AZ3_6:54 no longer at interface |
F:186 [PRO] | 6:12 [C] | BE:282 [ASN] | B5:4502 [G] | ❌ 6AZ3_6:12 no longer at interface |
F:74 [VAL] | 6:59 [C] | BE:187 [VAL] | B5:4676 [C] | ❌ 7O7Y_BE:187 no longer at interface |
F:147 [SER] | 6:61 [U] | BE:246 [THR] | B5:4678 [C] | ❌ 7O7Y_BE:246 no longer at interface |
F:49 [ARG] | 6:49 [C] | BE:163 [LYS] | B5:4622 [C] | ❌ 7O7Y_BE:163 no longer at interface |
F:106 [PHE] | 6:63 [A] | BE:223 [LYS] | B5:4679 [C] | ❌ 6AZ3_F:106 no longer at interface |
F:175 [ALA] | 6:55 [U] | BE:271 [GLN] | B5:4671 [U] | ❌ 6AZ3_F:175 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
SH3 | 0.78 | 1.58 | 0.35 | 0.87 | 0.34 | 0.86 | 0.89 | 0.58 | 0.46 | 0.15 | 0.36 |
Other pairs involving 6AZ3_F_6 or 7O7Y_BE_B5
Total number of entries: 2
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_F_1 | 7O7Y_BE_B5 | 0.26 | 0.92 | 2.11 | 0.12 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |
6AZ3_F_6 | 7O7Y_BE_B5 | 0.58 | 0.78 | 1.58 | 0.35 | SH3 | compare |