Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_K
|
6AZ3_1
|
7O7Y_BM
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
K:112 [LYS] | 1:1244 [G] | BM:53 [LYS] | B5:1863 [C] | ✔ |
K:75 [ARG] | 1:1241 [A] | BM:17 [PHE] | B5:1860 [C] | ✔ |
K:92 [ASN] | 1:1244 [G] | BM:34 [ASN] | B5:1863 [C] | ✔ |
K:92 [ASN] | 1:1245 [G] | BM:34 [ASN] | B5:1864 [G] | ✔ |
K:126 [ASN] | 1:530 [U] | BM:67 [SER] | B5:816 [C] | ✔ |
K:125 [ARG] | 1:529 [A] | BM:66 [HIS] | B5:815 [G] | ✔ |
K:124 [SER] | 1:528 [A] | BM:65 [PRO] | B5:814 [A] | ✔ |
K:92 [ASN] | 1:1243 [G] | BM:34 [ASN] | B5:1862 [A] | ❌ 7O7Y_BM_B5 |
K:126 [ASN] | 1:529 [A] | BM:67 [SER] | B5:815 [G] | ❌ 7O7Y_BM_B5 |
K:125 [ARG] | 1:528 [A] | BM:66 [HIS] | B5:814 [A] | ❌ 7O7Y_BM_B5 |
K:105 [TRP] | 1:543 [G] | BM:46 [ARG] | B5:832 [G] | ❌ 6AZ3_K_1 |
K:112 [LYS] | 1:1243 [G] | BM:53 [LYS] | B5:1862 [A] | ❌ 6AZ3_K_1 |
K:124 [SER] | 1:529 [A] | BM:65 [PRO] | B5:815 [G] | ❌ 6AZ3_K_1 |
K:113 [ASN] | 1:1242 [U] | BM:54 [CYS] | B5:1861 [G] | ❌ 7O7Y_BM:54, 7O7Y_B5:1861 no longer at interface |
K:112 [LYS] | 1:1242 [U] | BM:53 [LYS] | B5:1861 [G] | ❌ 7O7Y_B5:1861 no longer at interface |
K:76 [GLY] | 1:1242 [U] | BM:18 [GLY] | B5:1861 [G] | ❌ 7O7Y_BM:18, 7O7Y_B5:1861 no longer at interface |
K:75 [ARG] | 1:1240 [U] | BM:17 [PHE] | B5:1859 [C] | ❌ 7O7Y_B5:1859 no longer at interface |
K:75 [ARG] | 1:1242 [U] | BM:17 [PHE] | B5:1861 [G] | ❌ 7O7Y_B5:1861 no longer at interface |
K:124 [SER] | 1:527 [A] | BM:65 [PRO] | B5:811 [U] | ❌ 7O7Y_B5:811 no longer at interface |
K:110 [ASN] | 1:1242 [U] | BM:51 [PRO] | B5:1861 [G] | ❌ 7O7Y_BM:51, 7O7Y_B5:1861 no longer at interface |
K:109 [GLN] | 1:1242 [U] | BM:50 [MET] | B5:1861 [G] | ❌ 7O7Y_BM:50, 7O7Y_B5:1861 no longer at interface |
K:77 [PRO] | 1:1242 [U] | BM:19 [PRO] | B5:1861 [G] | ❌ 7O7Y_B5:1861 no longer at interface |
K:77 [PRO] | 1:544 [A] | BM:19 [PRO] | B5:836 [C] | ❌ 6AZ3_1:544 no longer at interface |
K:78 [ARG] | 1:544 [A] | BM:20 [HIS] | B5:836 [C] | ❌ 6AZ3_1:544 no longer at interface |
K:78 [ARG] | 1:545 [A] | BM:20 [HIS] | B5:837 [U] | ❌ 6AZ3_1:545 no longer at interface |
K:87 [ASP] | 1:523 [G] | BM:29 [ASP] | B5:743 [G] | ❌ 6AZ3_K:87, 6AZ3_1:523 no longer at interface |
K:88 [ILE] | 1:523 [G] | BM:30 [VAL] | B5:743 [G] | ❌ 6AZ3_K:88, 6AZ3_1:523 no longer at interface |
K:105 [TRP] | 1:544 [A] | BM:46 [ARG] | B5:836 [C] | ❌ 6AZ3_1:544 no longer at interface |
K:105 [TRP] | 1:545 [A] | BM:46 [ARG] | B5:837 [U] | ❌ 6AZ3_1:545 no longer at interface |
K:106 [ARG] | 1:545 [A] | BM:47 [ARG] | B5:837 [U] | ❌ 6AZ3_K:106, 6AZ3_1:545 no longer at interface |
K:107 [HIS] | 1:544 [A] | BM:48 [GLN] | B5:836 [C] | ❌ 6AZ3_1:544 no longer at interface |
K:107 [HIS] | 1:545 [A] | BM:48 [GLN] | B5:837 [U] | ❌ 6AZ3_1:545 no longer at interface |
K:125 [ARG] | 1:523 [G] | BM:66 [HIS] | B5:743 [G] | ❌ 6AZ3_1:523 no longer at interface |
K:128 [SER] | 1:515 [U] | BM:69 [ARG] | B5:733 [C] | ❌ 6AZ3_K:128, 6AZ3_1:515 no longer at interface |
K:128 [SER] | 1:516 [G] | BM:69 [ARG] | B5:734 [G] | ❌ 6AZ3_K:128, 6AZ3_1:516 no longer at interface |
K:129 [ALA] | 1:514 [C] | BM:70 [GLN] | B5:728 [G] | ❌ 6AZ3_K:129, 6AZ3_1:514 no longer at interface |
K:130 [LYS] | 1:515 [U] | BM:71 [LYS] | B5:733 [C] | ❌ 6AZ3_K:130, 6AZ3_1:515 no longer at interface |
K:130 [LYS] | 1:516 [G] | BM:71 [LYS] | B5:734 [G] | ❌ 6AZ3_K:130, 6AZ3_1:516 no longer at interface |
K:131 [ALA] | 1:515 [U] | BM:72 [TYR] | B5:733 [C] | ❌ 6AZ3_K:131, 6AZ3_1:515 no longer at interface |
K:134 [ASP] | 1:515 [U] | BM:75 [LYS] | B5:733 [C] | ❌ 6AZ3_K:134, 6AZ3_1:515 no longer at interface |
K:67 [ALA] | 1:523 [G] | BM:9 [VAL] | B5:743 [G] | ❌ 6AZ3_K:67, 6AZ3_1:523 no longer at interface |
K:110 [ASN] | 1:1243 [G] | BM:51 [PRO] | B5:1862 [A] | ❌ 7O7Y_BM:51 no longer at interface |
K:110 [ASN] | 1:1244 [G] | BM:51 [PRO] | B5:1863 [C] | ❌ 7O7Y_BM:51 no longer at interface |
K:74 [LEU] | 1:1241 [A] | BM:16 [SER] | B5:1860 [C] | ❌ 6AZ3_K:74 no longer at interface |
K:91 [ALA] | 1:1245 [G] | BM:33 [GLN] | B5:1864 [G] | ❌ 6AZ3_K:91 no longer at interface |
K:127 [CYS] | 1:530 [U] | BM:68 [ALA] | B5:816 [C] | ❌ 6AZ3_K:127 no longer at interface |
K:127 [CYS] | 1:529 [A] | BM:68 [ALA] | B5:815 [G] | ❌ 6AZ3_K:127 no longer at interface |
K:128 [SER] | 1:530 [U] | BM:69 [ARG] | B5:816 [C] | ❌ 6AZ3_K:128 no longer at interface |
K:128 [SER] | 1:529 [A] | BM:69 [ARG] | B5:815 [G] | ❌ 6AZ3_K:128 no longer at interface |
K:131 [ALA] | 1:530 [U] | BM:72 [TYR] | B5:816 [C] | ❌ 6AZ3_K:131 no longer at interface |
K:131 [ALA] | 1:529 [A] | BM:72 [TYR] | B5:815 [G] | ❌ 6AZ3_K:131 no longer at interface |
K:134 [ASP] | 1:529 [A] | BM:75 [LYS] | B5:815 [G] | ❌ 6AZ3_K:134 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
SH3 | Eukaryotic large subunit ribosomal RNA | 0.91 | 1.48 | 0.18 | 0.85 | 0.91 | 0.59 | 0.53 | 0.14 | 0.16 | 0.09 | 0.87 |
Other pairs involving 6AZ3_K_1 or 7O7Y_BM_B5
Total number of entries: 2
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_K_6 | 7O7Y_BM_B5 | 0.57 | 0.74 | 2.56 | 0.05 | SH3 | compare | |
6AZ3_K_1 | 7O7Y_BM_B5 | 0.14 | 0.91 | 1.48 | 0.18 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |