Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_K
|
6AZ3_6
|
7O7Y_BM
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
K:180 [HIS] | 6:51 [A] | BM:121 [ARG] | B5:4666 [G] | ✔ |
K:180 [HIS] | 6:52 [G] | BM:121 [ARG] | B5:4667 [C] | ✔ |
K:176 [ARG] | 6:48 [C] | BM:117 [LYS] | B5:4620 [U] | ✔ |
K:176 [ARG] | 6:49 [C] | BM:117 [LYS] | B5:4621 [U] | ✔ |
K:176 [ARG] | 6:52 [G] | BM:117 [LYS] | B5:4667 [C] | ✔ |
K:176 [ARG] | 6:53 [U] | BM:117 [LYS] | B5:4668 [C] | ✔ |
K:179 [ALA] | 6:46 [C] | BM:120 [ASN] | B5:4618 [C] | ✔ |
K:179 [ALA] | 6:47 [G] | BM:120 [ASN] | B5:4619 [C] | ✔ |
K:177 [SER] | 6:52 [G] | BM:118 [MET] | B5:4667 [C] | ✔ |
K:177 [SER] | 6:53 [U] | BM:118 [MET] | B5:4668 [C] | ✔ |
K:183 [ARG] | 6:47 [G] | BM:124 [LYS] | B5:4619 [C] | ✔ |
K:172 [ARG] | 6:48 [C] | BM:113 [MET] | B5:4620 [U] | ✔ |
K:172 [ARG] | 6:49 [C] | BM:113 [MET] | B5:4621 [U] | ✔ |
K:150 [THR] | 6:41 [G] | BM:91 [TRP] | B5:4608 [U] | ✔ |
K:150 [THR] | 6:42 [A] | BM:91 [TRP] | B5:4610 [C] | ✔ |
K:153 [ARG] | 6:42 [A] | BM:94 [LYS] | B5:4610 [C] | ✔ |
K:149 [ARG] | 6:39 [U] | BM:90 [ARG] | B5:4606 [G] | ✔ |
K:149 [ARG] | 6:40 [C] | BM:90 [ARG] | B5:4607 [G] | ✔ |
K:149 [ARG] | 6:41 [G] | BM:90 [ARG] | B5:4608 [U] | ✔ |
K:62 [SER] | 6:24 [C] | BM:4 [ARG] | B5:4512 [G] | ✔ |
K:157 [LYS] | 6:42 [A] | BM:98 [ARG] | B5:4610 [C] | ✔ |
K:175 [ARG] | 6:46 [C] | BM:116 [LYS] | B5:4618 [C] | ✔ |
K:175 [ARG] | 6:47 [G] | BM:116 [LYS] | B5:4619 [C] | ✔ |
K:173 [VAL] | 6:53 [U] | BM:114 [LYS] | B5:4668 [C] | ✔ |
K:176 [ARG] | 6:47 [G] | BM:117 [LYS] | B5:4619 [C] | ❌ 7O7Y_BM_B5 |
K:183 [ARG] | 6:46 [C] | BM:124 [LYS] | B5:4618 [C] | ❌ 7O7Y_BM_B5 |
K:183 [ARG] | 6:51 [A] | BM:124 [LYS] | B5:4666 [G] | ❌ 7O7Y_BM_B5 |
K:181 [TRP] | 6:53 [U] | BM:122 [ILE] | B5:4668 [C] | ❌ 7O7Y_BM_B5 |
K:150 [THR] | 6:40 [C] | BM:91 [TRP] | B5:4607 [G] | ❌ 7O7Y_BM_B5 |
K:169 [TYR] | 6:53 [U] | BM:110 [TYR] | B5:4668 [C] | ❌ 7O7Y_BM_B5 |
K:173 [VAL] | 6:49 [C] | BM:114 [LYS] | B5:4621 [U] | ❌ 6AZ3_K_6 |
K:175 [ARG] | 6:48 [C] | BM:116 [LYS] | B5:4620 [U] | ❌ 6AZ3_K_6 |
K:180 [HIS] | 6:48 [C] | BM:121 [ARG] | B5:4620 [U] | ❌ 6AZ3_K_6 |
K:62 [SER] | 6:41 [G] | BM:4 [ARG] | B5:4608 [U] | ❌ 6AZ3_K_6 |
K:153 [ARG] | 6:41 [G] | BM:94 [LYS] | B5:4608 [U] | ❌ 6AZ3_K_6 |
K:61 [LYS] | 6:26 [G] | BM:3 [PHE] | B5:4514 [C] | ❌ 7O7Y_B5:4514 no longer at interface |
K:156 [ALA] | 6:43 [A] | BM:97 [ALA] | B5:4613 [A] | ❌ 7O7Y_B5:4613 no longer at interface |
K:153 [ARG] | 6:43 [A] | BM:94 [LYS] | B5:4613 [A] | ❌ 7O7Y_B5:4613 no longer at interface |
K:160 [CYS] | 6:44 [G] | BM:101 [LYS] | B5:4616 [G] | ❌ 6AZ3_K:160, 6AZ3_6:44 no longer at interface |
K:160 [CYS] | 6:45 [G] | BM:101 [LYS] | B5:4617 [C] | ❌ 6AZ3_K:160, 6AZ3_6:45 no longer at interface |
K:169 [TYR] | 6:54 [A] | BM:110 [TYR] | B5:4669 [C] | ❌ 6AZ3_6:54 no longer at interface |
K:173 [VAL] | 6:54 [A] | BM:114 [LYS] | B5:4669 [C] | ❌ 6AZ3_6:54 no longer at interface |
K:175 [ARG] | 6:45 [G] | BM:116 [LYS] | B5:4617 [C] | ❌ 6AZ3_6:45 no longer at interface |
K:61 [LYS] | 6:23 [A] | BM:3 [PHE] | B5:4511 [A] | ❌ 6AZ3_6:23 no longer at interface |
K:154 [VAL] | 6:42 [A] | BM:95 [ILE] | B5:4610 [C] | ❌ 7O7Y_BM:95 no longer at interface |
K:147 [LYS] | 6:40 [C] | BM:88 [ALA] | B5:4607 [G] | ❌ 7O7Y_BM:88 no longer at interface |
K:148 [THR] | 6:40 [C] | BM:89 [THR] | B5:4607 [G] | ❌ 7O7Y_BM:89 no longer at interface |
K:148 [THR] | 6:41 [G] | BM:89 [THR] | B5:4608 [U] | ❌ 7O7Y_BM:89 no longer at interface |
K:80 [ASP] | 6:42 [A] | BM:22 [GLY] | B5:4610 [C] | ❌ 7O7Y_BM:22 no longer at interface |
K:119 [TYR] | 6:40 [C] | BM:60 [PHE] | B5:4607 [G] | ❌ 7O7Y_BM:60 no longer at interface |
K:79 [GLN] | 6:42 [A] | BM:21 [ALA] | B5:4610 [C] | ❌ 7O7Y_BM:21 no longer at interface |
K:118 [LYS] | 6:40 [C] | BM:59 [ASP] | B5:4607 [G] | ❌ 7O7Y_BM:59 no longer at interface |
K:118 [LYS] | 6:41 [G] | BM:59 [ASP] | B5:4608 [U] | ❌ 7O7Y_BM:59 no longer at interface |
K:72 [ARG] | 6:42 [A] | BM:14 [TYR] | B5:4610 [C] | ❌ 7O7Y_BM:14 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
SH3 | 0.74 | 2.56 | 0.05 | 0.85 | 0.34 | 0.57 | 0.63 | 0.57 | 0.41 | 0.12 | 0.63 |
Other pairs involving 6AZ3_K_6 or 7O7Y_BM_B5
Total number of entries: 2
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_K_6 | 7O7Y_BM_B5 | 0.57 | 0.74 | 2.56 | 0.05 | SH3 | compare | |
6AZ3_K_1 | 7O7Y_BM_B5 | 0.14 | 0.91 | 1.48 | 0.18 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |