RNAprotDB

Contacts -

2QUX_A	2QUX_C	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
A:45 [ARG]	C:9 [A]	4.19	C:18 [U]			92.7
A:46 [GLN]	C:11 [A]	4.91				39.48
A:47 [ASN]	C:11 [A]	3.51				98.82
A:47 [ASN]	C:12 [U]	2.73				98.82
A:48 [GLY]	C:10 [G]	4.77	C:17 [C]			39.36
A:48 [GLY]	C:11 [A]	2.89				39.36
A:49 [ALA]	C:11 [A]	4.37				95.74
A:51 [THR]	C:12 [U]	3.67				98.33
A:52 [ALA]	C:12 [U]	3.8				48.42
A:54 [ARG]	C:11 [A]	3.88			base/AA stacks	92.7
A:54 [ARG]	C:12 [U]	3.99				92.7
A:54 [ARG]	C:13 [A]	3.3			base/AA stacks	92.7
A:54 [ARG]	C:15 [G]	2.99		base:SC, base:SC		92.7
A:58 [LYS]	C:6 [A]	3.73				89.56
A:83 [VAL]	C:6 [A]	3.57				93.36
A:84 [TRP]	C:6 [A]	4.82				76.0
A:85 [SER]	C:6 [A]	2.79		base:SC		99.0
A:87 [ASP]	C:11 [A]	4.66				91.67
A:87 [ASP]	C:13 [A]	2.8		base:BB		91.67
A:87 [ASP]	C:15 [G]	4.86				91.67
A:88 [VAL]	C:13 [A]	3.95				56.05
A:89 [THR]	C:12 [U]	3.07				53.29
A:89 [THR]	C:13 [A]	2.55		base:SC, base:SC		53.29
A:91 [VAL]	C:12 [U]	3.64				93.36

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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