Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
| 2QUX_A
|
2QUX_C
|
4L8H_A
|
4L8H_R
|
Conserved?
|
|---|---|---|---|---|
| A:89 [THR] | C:13 [A] | A:95 [SER] | R:5 [A] | ✔ |
| A:54 [ARG] | C:11 [A] | A:63 [LYS] | R:4 [C] | ✔ |
| A:54 [ARG] | C:13 [A] | A:63 [LYS] | R:5 [A] | ✔ |
| A:87 [ASP] | C:13 [A] | A:93 [THR] | R:5 [A] | ✔ |
| A:87 [ASP] | C:11 [A] | A:93 [THR] | R:4 [C] | ❌ 4L8H_A_R |
| A:52 [ALA] | C:13 [A] | A:61 [ASN] | R:5 [A] | ❌ 2QUX_A_C |
| A:54 [ARG] | C:15 [G] | A:63 [LYS] | R:6 [U] | ❌ 4L8H_R:6 no longer at interface |
| A:87 [ASP] | C:15 [G] | A:93 [THR] | R:6 [U] | ❌ 4L8H_R:6 no longer at interface |
| A:49 [ALA] | C:11 [A] | A:57 [ARG] | R:4 [C] | ❌ 4L8H_A:57 no longer at interface |
| A:88 [VAL] | C:13 [A] | A:94 [PHE] | R:5 [A] | ❌ 4L8H_A:94 no longer at interface |
| A:45 [ARG] | C:9 [A] | A:53 [SER] | R:2 [U] | ❌ 4L8H_A:53 no longer at interface |
| A:46 [GLN] | C:11 [A] | A:54 [GLN] | R:4 [C] | ❌ 4L8H_A:54 no longer at interface |
| A:48 [GLY] | C:10 [G] | A:56 [SER] | R:3 [G] | ❌ 4L8H_A:56 no longer at interface |
| A:48 [GLY] | C:11 [A] | A:56 [SER] | R:4 [C] | ❌ 4L8H_A:56 no longer at interface |
| A:47 [ASN] | C:11 [A] | A:55 [PRO] | R:4 [C] | ❌ 4L8H_A:55 no longer at interface |
| A:50 [LYS] | C:11 [A] | A:59 [ARG] | R:4 [C] | ❌ 2QUX_A:50 no longer at interface |
| A:50 [LYS] | C:10 [G] | A:59 [ARG] | R:3 [G] | ❌ 2QUX_A:50 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RNA bacteriophage capsid protein | 0.73 | 0.83 | 0.06 | 0.8 | 0.5 | 0.44 | 0.57 | 0.43 | 0.30 | 0.12 | 0.85 |
Other pairs involving 2QUX_A_C or 4L8H_A_R
Total number of entries: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2QUX_A_C | 4L8H_A_R | 0.43 | 0.73 | 0.83 | 0.06 | RNA bacteriophage capsid protein | compare |