Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 4L8H_A
|
4L8H_R
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:27 [ASN] | R:12 [A] | 4.58 | 93.33 | |||
| A:27 [ASN] | R:13 [G] | 4.96 | R:9 [C] | 93.33 | ||
| A:30 [ASN] | R:12 [A] | 2.98 | sugar:SC | 72.47 | ||
| A:30 [ASN] | R:13 [G] | 4.1 | R:9 [C] | 72.47 | ||
| A:32 [VAL] | R:12 [A] | 3.58 | 96.6 | |||
| A:47 [ARG] | R:12 [A] | 4.36 | 72.32 | |||
| A:49 [THR] | R:12 [A] | 2.62 | base:SC, base:SC | 98.38 | ||
| A:50 [VAL] | R:12 [A] | 3.83 | 41.75 | |||
| A:51 [SER] | R:12 [A] | 2.8 | base:SC | 61.47 | ||
| A:58 [ASN] | R:2 [U] | 2.66 | R:19 [A] | sugar:SC | 93.33 | |
| A:58 [ASN] | R:3 [G] | 3.41 | R:18 [C] | 93.33 | ||
| A:59 [ARG] | R:3 [G] | 3.81 | R:18 [C] | 79.34 | ||
| A:59 [ARG] | R:4 [C] | 3.66 | R:17 [G] | 79.34 | ||
| A:61 [ASN] | R:5 [A] | 3.63 | base:SC | 55.42 | ||
| A:63 [LYS] | R:4 [C] | 3.34 | R:17 [G] | 93.81 | ||
| A:63 [LYS] | R:5 [A] | 2.88 | 93.81 | |||
| A:65 [GLN] | R:12 [A] | 2.93 | base:BB | 55.04 | ||
| A:66 [VAL] | R:12 [A] | 4.15 | 58.75 | |||
| A:67 [LYS] | R:11 [A] | 3.02 | base:SC | 93.81 | ||
| A:67 [LYS] | R:12 [A] | 3.89 | 93.81 | |||
| A:67 [LYS] | R:13 [G] | 3.93 | R:9 [C] | 93.81 | ||
| A:69 [GLN] | R:11 [A] | 3.37 | 76.53 | |||
| A:69 [GLN] | R:12 [A] | 4.95 | 76.53 | |||
| A:87 [GLN] | R:11 [A] | 4.13 | 51.99 | |||
| A:89 [TYR] | R:10 [U] | 4.46 | 49.54 | |||
| A:89 [TYR] | R:11 [A] | 2.39 | base/AA stacks | 49.54 | ||
| A:91 [ASP] | R:11 [A] | 2.6 | base:SC | 95.25 | ||
| A:93 [THR] | R:5 [A] | 4.01 | 62.94 | |||
| A:95 [SER] | R:5 [A] | 3.25 | 86.99 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group5 | 4L8H_A_R | A: Coat protein, Enterobacteria phage qbeta (genetically engineered) R: RNA operator hairpin | P03615 | RNA bacteriophage capsid protein | ✘ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2QUX_A_C | 4L8H_A_R | 0.43 | 0.73 | 0.83 | 0.06 | RNA bacteriophage capsid protein | compare |