RNAprotDB

All interfaces > All interologs > Interface groups > group50 > 6AZ3_Y_2

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6AZ3_Y
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Y:53 [VAL] 2:981 [A] 4.9 2:1005 [G] 79.8
Y:53 [VAL] 2:982 [C] 4.18 2:1004 [G] 79.8
Y:54 [VAL] 2:981 [A] 3.35 2:1005 [G] 80.7
Y:54 [VAL] 2:982 [C] 3.65 2:1004 [G] 80.7
Y:54 [VAL] 2:998 [A] 4.59 80.7
Y:55 [ARG] 2:981 [A] 4.86 2:1005 [G] 46.6
Y:55 [ARG] 2:982 [C] 3.35 2:1004 [G] 46.6
Y:55 [ARG] 2:983 [G] 2.75 2:1003 [C] 46.6
Y:55 [ARG] 2:998 [A] 3.35 46.6
Y:55 [ARG] 2:999 [G] 4.92 46.6
Y:56 [GLY] 2:998 [A] 2.54 31.4
Y:56 [GLY] 2:999 [G] 3.6 31.4
Y:57 [MET] 2:998 [A] 3.88 90.6
Y:133 [ARG] 2:975 [G] 2.78 base:BB 76.4
Y:133 [ARG] 2:976 [A] 3.66 76.4
Y:133 [ARG] 2:977 [A] 3.61 76.4
Y:133 [ARG] 2:978 [C] 3.9 76.4
Y:134 [PHE] 2:975 [G] 2.33 sugar:BB 86.1
Y:134 [PHE] 2:976 [A] 3.4 86.1

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group50 6AZ3_Y_2 Y: Ribosomal l27e family protein, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A504XEJ0 SH3 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_Y_2 7O7Y_BZ_B5 0.56 0.91 2.01 0.33 SH3 Eukaryotic large subunit ribosomal RNA compare