Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_Y
|
6AZ3_2
|
7O7Y_BZ
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
Y:133 [ARG] | 2:975 [G] | BZ:135 [ARG] | B5:3850 [G] | ✔ |
Y:133 [ARG] | 2:976 [A] | BZ:135 [ARG] | B5:3851 [C] | ✔ |
Y:133 [ARG] | 2:977 [A] | BZ:135 [ARG] | B5:3852 [G] | ✔ |
Y:55 [ARG] | 2:981 [A] | BZ:55 [ALA] | B5:3856 [A] | ✔ |
Y:55 [ARG] | 2:982 [C] | BZ:55 [ALA] | B5:3857 [G] | ✔ |
Y:55 [ARG] | 2:983 [G] | BZ:55 [ALA] | B5:3858 [C] | ✔ |
Y:54 [VAL] | 2:981 [A] | BZ:54 [THR] | B5:3856 [A] | ✔ |
Y:54 [VAL] | 2:982 [C] | BZ:54 [THR] | B5:3857 [G] | ✔ |
Y:134 [PHE] | 2:975 [G] | BZ:136 [PHE] | B5:3850 [G] | ✔ |
Y:134 [PHE] | 2:976 [A] | BZ:136 [PHE] | B5:3851 [C] | ✔ |
Y:53 [VAL] | 2:982 [C] | BZ:53 [VAL] | B5:3857 [G] | ✔ |
Y:56 [GLY] | 2:998 [A] | BZ:56 [ALA] | B5:3895 [C] | ❌ 7O7Y_BZ_B5 |
Y:56 [GLY] | 2:999 [G] | BZ:56 [ALA] | B5:3896 [G] | ❌ 7O7Y_BZ_B5 |
Y:55 [ARG] | 2:998 [A] | BZ:55 [ALA] | B5:3895 [C] | ❌ 7O7Y_BZ_B5 |
Y:55 [ARG] | 2:999 [G] | BZ:55 [ALA] | B5:3896 [G] | ❌ 7O7Y_BZ_B5 |
Y:54 [VAL] | 2:998 [A] | BZ:54 [THR] | B5:3895 [C] | ❌ 7O7Y_BZ_B5 |
Y:53 [VAL] | 2:981 [A] | BZ:53 [VAL] | B5:3856 [A] | ❌ 7O7Y_BZ_B5 |
Y:56 [GLY] | 2:982 [C] | BZ:56 [ALA] | B5:3857 [G] | ❌ 6AZ3_Y_2 |
Y:133 [ARG] | 2:978 [C] | BZ:135 [ARG] | B5:3853 [C] | ❌ 7O7Y_B5:3853 no longer at interface |
Y:52 [LYS] | 2:980 [A] | BZ:52 [LYS] | B5:3855 [A] | ❌ 6AZ3_Y:52, 6AZ3_2:980 no longer at interface |
Y:57 [MET] | 2:998 [A] | BZ:57 [MET] | B5:3895 [C] | ❌ 7O7Y_BZ:57 no longer at interface |
Y:52 [LYS] | 2:981 [A] | BZ:52 [LYS] | B5:3856 [A] | ❌ 6AZ3_Y:52 no longer at interface |
Y:58 [SER] | 2:999 [G] | BZ:58 [GLY] | B5:3896 [G] | ❌ 6AZ3_Y:58 no longer at interface |
Y:58 [SER] | 2:998 [A] | BZ:58 [GLY] | B5:3895 [C] | ❌ 6AZ3_Y:58 no longer at interface |
Y:59 [LYS] | 2:998 [A] | BZ:59 [LYS] | B5:3895 [C] | ❌ 6AZ3_Y:59 no longer at interface |
Y:60 [GLN] | 2:998 [A] | BZ:60 [LYS] | B5:3895 [C] | ❌ 6AZ3_Y:60 no longer at interface |
Y:61 [THR] | 2:999 [G] | BZ:61 [LYS] | B5:3896 [G] | ❌ 6AZ3_Y:61 no longer at interface |
Y:61 [THR] | 2:998 [A] | BZ:61 [LYS] | B5:3895 [C] | ❌ 6AZ3_Y:61 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
SH3 | Eukaryotic large subunit ribosomal RNA | 0.91 | 2.01 | 0.33 | 0.92 | 0.9 | 0.86 | 0.89 | 0.56 | 0.79 | 0.33 | 0.59 |
Other pairs involving 6AZ3_Y_2 or 7O7Y_BZ_B5
Total number of entries: 2
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_Y_2 | 7O7Y_BZ_B5 | 0.56 | 0.91 | 2.01 | 0.33 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |
6AZ3_Y_3 | 7O7Y_BZ_B5 | 0.74 | 0.92 | 0.95 | 0.48 | SH3 | compare |