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All interfaces > All interologs > Interface groups > group50 > 6AZ3_Y_3

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_Y
6AZ3_3
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Y:15 [ALA] 3:8 [A] 3.84 37.33
Y:15 [ALA] 3:9 [A] 4.73 3:6 [G] 37.33
Y:16 [GLY] 3:6 [G] 3.82 3:9 [A] 96.46
Y:16 [GLY] 3:8 [A] 3.51 96.46
Y:16 [GLY] 3:9 [A] 3.57 3:6 [G] 96.46
Y:16 [GLY] 3:10 [OMU] 4.03 3:5 [G] 96.46
Y:17 [ARG] 3:4 [U] 3.06 3:11 [G] 88.36
Y:17 [ARG] 3:5 [G] 2.71 3:10 [OMU] base:SC 88.36
Y:17 [ARG] 3:6 [G] 2.93 3:9 [A] base:BB 88.36
Y:17 [ARG] 3:10 [OMU] 3.33 3:5 [G] 88.36
Y:17 [ARG] 3:11 [G] 4.32 3:4 [U] 88.36
Y:18 [TYR] 3:5 [G] 4.19 3:10 [OMU] 38.54
Y:18 [TYR] 3:6 [G] 4.96 3:9 [A] 38.54
Y:36 [ARG] 3:7 [U] 3.34 70.11
Y:37 [PRO] 3:104 [U] 3.18 3:130 [G] 41.11
Y:37 [PRO] 3:105 [U] 4.2 3:129 [G] 41.11
Y:38 [TYR] 3:7 [U] 3.18 base/AA stacks 53.19
Y:38 [TYR] 3:103 [U] 4.62 3:131 [G] 53.19
Y:38 [TYR] 3:104 [U] 3.75 3:130 [G] 53.19
Y:47 [LYS] 3:4 [U] 2.8 3:11 [G] 50.12
Y:48 [LYS] 3:2 [A] 3.81 66.71
Y:48 [LYS] 3:3 [G] 3.45 3:12 [C] 66.71
Y:48 [LYS] 3:212 [G] 3.34 base:SC 66.71
Y:48 [LYS] 3:213 [U] 3.33 66.71
Y:51 [LYS] 3:211 [U] 3.53 3:18 [A] 45.73
Y:51 [LYS] 3:212 [G] 2.97 base:SC 45.73
Y:51 [LYS] 3:213 [U] 3.66 sugar:SC 45.73
Y:61 [THR] 3:213 [U] 3.33 59.67
Y:64 [ARG] 3:2 [A] 3.31 59.45
Y:64 [ARG] 3:213 [U] 2.98 base/AA stacks 59.45
Y:65 [ARG] 3:211 [U] 3.04 3:18 [A] 88.03
Y:65 [ARG] 3:212 [G] 3.66 88.03
Y:65 [ARG] 3:213 [U] 3.18 sugar:SC 88.03
Y:67 [GLN] 3:2 [A] 3.38 57.47
Y:73 [ARG] 3:6 [G] 2.93 3:9 [A] 91.36
Y:73 [ARG] 3:7 [U] 3.74 91.36
Y:73 [ARG] 3:8 [A] 2.53 91.36
Y:74 [VAL] 3:7 [U] 3.2 2.65
Y:75 [VAL] 3:7 [U] 3.86 58.42
Y:75 [VAL] 3:8 [A] 4.89 58.42
Y:76 [ASN] 3:7 [U] 3.08 base:SC, sugar:BB 94.42
Y:76 [ASN] 3:103 [U] 3.41 3:131 [G] 94.42
Y:76 [ASN] 3:104 [U] 3.18 3:130 [G] 94.42
Y:78 [LYS] 3:103 [U] 4.05 3:131 [G] 70.45
Y:78 [LYS] 3:104 [U] 3.09 3:130 [G] 70.45
Y:79 [HIS] 3:7 [U] 2.69 sugar:SC 97.61
Y:79 [HIS] 3:8 [A] 3.05 sugar:SC 97.61
Y:79 [HIS] 3:102 [C] 4.05 3:132 [G] 97.61
Y:79 [HIS] 3:103 [U] 2.42 3:131 [G] 97.61
Y:109 [LYS] 3:5 [G] 3.84 3:10 [OMU] 32.28
Y:131 [ARG] 3:209 [G] 3.66 3:20 [U] 78.88
Y:131 [ARG] 3:210 [G] 2.53 3:19 [C] 78.88
Y:133 [ARG] 3:209 [G] 3.42 3:20 [U] 76.48
Y:133 [ARG] 3:210 [G] 4.54 3:19 [C] 76.48

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group50 6AZ3_Y_3 Y: Ribosomal l27e family protein, Leishmania donovani (natural) 3: rRNA gamma, Leishmania donovani (natural) A0A504XEJ0 SH3 ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_Y_3 7O7Y_BZ_B5 0.74 0.92 0.95 0.48 SH3 compare