Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Interface
show interface as licoriceCommon contacts -
6AZ3_Y
|
6AZ3_3
|
7O7Y_BZ
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
Y:75 [VAL] | 3:7 [U] | BZ:75 [TYR] | B5:2423 [U] | ✔ |
Y:75 [VAL] | 3:8 [A] | BZ:75 [TYR] | B5:2424 [A] | ✔ |
Y:74 [VAL] | 3:7 [U] | BZ:74 [VAL] | B5:2423 [U] | ✔ |
Y:65 [ARG] | 3:211 [U] | BZ:65 [ARG] | B5:2599 [G] | ✔ |
Y:15 [ALA] | 3:8 [A] | BZ:15 [ALA] | B5:2424 [A] | ✔ |
Y:15 [ALA] | 3:9 [A] | BZ:15 [ALA] | B5:2425 [A] | ✔ |
Y:76 [ASN] | 3:7 [U] | BZ:76 [ASN] | B5:2423 [U] | ✔ |
Y:76 [ASN] | 3:103 [U] | BZ:76 [ASN] | B5:2498 [C] | ✔ |
Y:76 [ASN] | 3:104 [U] | BZ:76 [ASN] | B5:2499 [U] | ✔ |
Y:16 [GLY] | 3:6 [G] | BZ:16 [GLY] | B5:2422 [G] | ✔ |
Y:16 [GLY] | 3:8 [A] | BZ:16 [GLY] | B5:2424 [A] | ✔ |
Y:16 [GLY] | 3:9 [A] | BZ:16 [GLY] | B5:2425 [A] | ✔ |
Y:16 [GLY] | 3:10 [OMU] | BZ:16 [GLY] | B5:2426 [C] | ✔ |
Y:38 [TYR] | 3:7 [U] | BZ:38 [TYR] | B5:2423 [U] | ✔ |
Y:38 [TYR] | 3:103 [U] | BZ:38 [TYR] | B5:2498 [C] | ✔ |
Y:38 [TYR] | 3:104 [U] | BZ:38 [TYR] | B5:2499 [U] | ✔ |
Y:64 [ARG] | 3:213 [U] | BZ:64 [LYS] | B5:2601 [G] | ✔ |
Y:133 [ARG] | 3:209 [G] | BZ:135 [ARG] | B5:2596 [G] | ✔ |
Y:78 [LYS] | 3:103 [U] | BZ:78 [ASN] | B5:2498 [C] | ✔ |
Y:78 [LYS] | 3:104 [U] | BZ:78 [ASN] | B5:2499 [U] | ✔ |
Y:18 [TYR] | 3:5 [G] | BZ:18 [TYR] | B5:2421 [G] | ✔ |
Y:18 [TYR] | 3:6 [G] | BZ:18 [TYR] | B5:2422 [G] | ✔ |
Y:109 [LYS] | 3:5 [G] | BZ:111 [ARG] | B5:2421 [G] | ✔ |
Y:48 [LYS] | 3:2 [A] | BZ:48 [ARG] | B5:2418 [U] | ✔ |
Y:48 [LYS] | 3:3 [G] | BZ:48 [ARG] | B5:2419 [G] | ✔ |
Y:17 [ARG] | 3:4 [U] | BZ:17 [ARG] | B5:2420 [C] | ✔ |
Y:17 [ARG] | 3:5 [G] | BZ:17 [ARG] | B5:2421 [G] | ✔ |
Y:17 [ARG] | 3:6 [G] | BZ:17 [ARG] | B5:2422 [G] | ✔ |
Y:17 [ARG] | 3:10 [OMU] | BZ:17 [ARG] | B5:2426 [C] | ✔ |
Y:17 [ARG] | 3:11 [G] | BZ:17 [ARG] | B5:2427 [G] | ✔ |
Y:36 [ARG] | 3:7 [U] | BZ:36 [ARG] | B5:2423 [U] | ✔ |
Y:79 [HIS] | 3:7 [U] | BZ:79 [HIS] | B5:2423 [U] | ✔ |
Y:79 [HIS] | 3:8 [A] | BZ:79 [HIS] | B5:2424 [A] | ✔ |
Y:79 [HIS] | 3:102 [C] | BZ:79 [HIS] | B5:2497 [C] | ✔ |
Y:79 [HIS] | 3:103 [U] | BZ:79 [HIS] | B5:2498 [C] | ✔ |
Y:131 [ARG] | 3:209 [G] | BZ:133 [LYS] | B5:2596 [G] | ✔ |
Y:131 [ARG] | 3:210 [G] | BZ:133 [LYS] | B5:2597 [G] | ✔ |
Y:51 [LYS] | 3:211 [U] | BZ:51 [ARG] | B5:2599 [G] | ✔ |
Y:51 [LYS] | 3:212 [G] | BZ:51 [ARG] | B5:2600 [A] | ✔ |
Y:73 [ARG] | 3:6 [G] | BZ:73 [LYS] | B5:2422 [G] | ✔ |
Y:73 [ARG] | 3:7 [U] | BZ:73 [LYS] | B5:2423 [U] | ✔ |
Y:73 [ARG] | 3:8 [A] | BZ:73 [LYS] | B5:2424 [A] | ✔ |
Y:65 [ARG] | 3:212 [G] | BZ:65 [ARG] | B5:2600 [A] | ❌ 7O7Y_BZ_B5 |
Y:65 [ARG] | 3:213 [U] | BZ:65 [ARG] | B5:2601 [G] | ❌ 7O7Y_BZ_B5 |
Y:64 [ARG] | 3:2 [A] | BZ:64 [LYS] | B5:2418 [U] | ❌ 7O7Y_BZ_B5 |
Y:133 [ARG] | 3:210 [G] | BZ:135 [ARG] | B5:2597 [G] | ❌ 7O7Y_BZ_B5 |
Y:48 [LYS] | 3:212 [G] | BZ:48 [ARG] | B5:2600 [A] | ❌ 7O7Y_BZ_B5 |
Y:48 [LYS] | 3:213 [U] | BZ:48 [ARG] | B5:2601 [G] | ❌ 7O7Y_BZ_B5 |
Y:51 [LYS] | 3:213 [U] | BZ:51 [ARG] | B5:2601 [G] | ❌ 7O7Y_BZ_B5 |
Y:61 [THR] | 3:213 [U] | BZ:61 [LYS] | B5:2601 [G] | ❌ 7O7Y_BZ_B5 |
Y:67 [GLN] | 3:2 [A] | BZ:67 [LYS] | B5:2418 [U] | ❌ 7O7Y_BZ_B5 |
Y:109 [LYS] | 3:4 [U] | BZ:111 [ARG] | B5:2420 [C] | ❌ 6AZ3_Y_3 |
Y:17 [ARG] | 3:8 [A] | BZ:17 [ARG] | B5:2424 [A] | ❌ 6AZ3_Y_3 |
Y:17 [ARG] | 3:9 [A] | BZ:17 [ARG] | B5:2425 [A] | ❌ 6AZ3_Y_3 |
Y:36 [ARG] | 3:6 [G] | BZ:36 [ARG] | B5:2422 [G] | ❌ 6AZ3_Y_3 |
Y:38 [TYR] | 3:105 [U] | BZ:38 [TYR] | B5:2500 [G] | ❌ 6AZ3_Y_3 |
Y:51 [LYS] | 3:2 [A] | BZ:51 [ARG] | B5:2418 [U] | ❌ 6AZ3_Y_3 |
Y:51 [LYS] | 3:210 [G] | BZ:51 [ARG] | B5:2597 [G] | ❌ 6AZ3_Y_3 |
Y:61 [THR] | 3:211 [U] | BZ:61 [LYS] | B5:2599 [G] | ❌ 6AZ3_Y_3 |
Y:133 [ARG] | 3:208 [G] | BZ:135 [ARG] | B5:2595 [G] | ❌ 6AZ3_3:208 no longer at interface |
Y:134 [PHE] | 3:208 [G] | BZ:136 [PHE] | B5:2595 [G] | ❌ 6AZ3_Y:134, 6AZ3_3:208 no longer at interface |
Y:51 [LYS] | 3:18 [A] | BZ:51 [ARG] | B5:2432 [C] | ❌ 6AZ3_3:18 no longer at interface |
Y:51 [LYS] | 3:19 [C] | BZ:51 [ARG] | B5:2433 [G] | ❌ 6AZ3_3:19 no longer at interface |
Y:37 [PRO] | 3:104 [U] | BZ:37 [PRO] | B5:2499 [U] | ❌ 7O7Y_BZ:37 no longer at interface |
Y:37 [PRO] | 3:105 [U] | BZ:37 [PRO] | B5:2500 [G] | ❌ 7O7Y_BZ:37 no longer at interface |
Y:47 [LYS] | 3:4 [U] | BZ:47 [ASP] | B5:2420 [C] | ❌ 7O7Y_BZ:47 no longer at interface |
Y:105 [ARG] | 3:5 [G] | BZ:107 [LYS] | B5:2421 [G] | ❌ 6AZ3_Y:105 no longer at interface |
Y:105 [ARG] | 3:6 [G] | BZ:107 [LYS] | B5:2422 [G] | ❌ 6AZ3_Y:105 no longer at interface |
Y:132 [LEU] | 3:209 [G] | BZ:134 [LEU] | B5:2596 [G] | ❌ 6AZ3_Y:132 no longer at interface |
Y:69 [GLY] | 3:3 [G] | BZ:69 [LYS] | B5:2419 [G] | ❌ 6AZ3_Y:69 no longer at interface |
Y:69 [GLY] | 3:4 [U] | BZ:69 [LYS] | B5:2420 [C] | ❌ 6AZ3_Y:69 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
SH3 | 0.92 | 0.95 | 0.48 | 0.92 | 0.85 | 0.91 | 1.0 | 0.74 | 0.72 | 0.38 | 0.41 |
Other pairs involving 6AZ3_Y_3 or 7O7Y_BZ_B5
Total number of entries: 2
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_Y_2 | 7O7Y_BZ_B5 | 0.56 | 0.91 | 2.01 | 0.33 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |
6AZ3_Y_3 | 7O7Y_BZ_B5 | 0.74 | 0.92 | 0.95 | 0.48 | SH3 | compare |