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All interfaces > All interologs > Interface groups > group50 > 7O7Y_BZ_B5

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_BZ
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BZ:15 [ALA] B5:2424 [A] 3.41 53.43
BZ:15 [ALA] B5:2425 [A] 3.98 B5:2422 [G] 53.43
BZ:16 [GLY] B5:2422 [G] 3.52 B5:2425 [A] 92.25
BZ:16 [GLY] B5:2424 [A] 3.65 92.25
BZ:16 [GLY] B5:2425 [A] 2.96 B5:2422 [G] 92.25
BZ:16 [GLY] B5:2426 [C] 4.07 B5:2421 [G] 92.25
BZ:17 [ARG] B5:2420 [C] 3.31 B5:2427 [G] base/AA stacks 87.2
BZ:17 [ARG] B5:2421 [G] 3.13 B5:2426 [C] base:SC, base:SC, base:SC 87.2
BZ:17 [ARG] B5:2422 [G] 2.66 B5:2425 [A] base:BB 87.2
BZ:17 [ARG] B5:2424 [A] 4.85 87.2
BZ:17 [ARG] B5:2425 [A] 4.98 B5:2422 [G] 87.2
BZ:17 [ARG] B5:2426 [C] 3.44 B5:2421 [G] 87.2
BZ:17 [ARG] B5:2427 [G] 4.08 B5:2420 [C] 87.2
BZ:18 [TYR] B5:2421 [G] 4.51 B5:2426 [C] 36.78
BZ:18 [TYR] B5:2422 [G] 4.77 B5:2425 [A] 36.78
BZ:36 [ARG] B5:2422 [G] 4.87 B5:2425 [A] 65.33
BZ:36 [ARG] B5:2423 [U] 2.97 sugar:SC 65.33
BZ:38 [TYR] B5:2423 [U] 2.97 sugar:SC base/AA stacks 53.6
BZ:38 [TYR] B5:2498 [C] 4.25 B5:2522 [G] 53.6
BZ:38 [TYR] B5:2499 [U] 3.66 B5:2521 [A] 53.6
BZ:38 [TYR] B5:2500 [G] 4.79 B5:2520 [G] 53.6
BZ:48 [ARG] B5:2418 [U] 3.04 B5:2600 [A] 72.87
BZ:48 [ARG] B5:2419 [G] 2.71 B5:2428 [C] 72.87
BZ:51 [ARG] B5:2418 [U] 3.42 B5:2600 [A] 55.02
BZ:51 [ARG] B5:2432 [C] 3.87 B5:2599 [G] 55.02
BZ:51 [ARG] B5:2433 [G] 3.9 B5:2598 [A] 55.02
BZ:51 [ARG] B5:2597 [G] 3.42 B5:2434 [A] 55.02
BZ:51 [ARG] B5:2598 [A] 3.13 B5:2433 [G] 55.02
BZ:51 [ARG] B5:2599 [G] 2.34 B5:2432 [C] base:SC, base:SC 55.02
BZ:51 [ARG] B5:2600 [A] 3.81 B5:2418 [U] 55.02
BZ:52 [LYS] B5:3855 [A] 4.19 B5:3903 [A] 69.41
BZ:52 [LYS] B5:3856 [A] 3.35 B5:3902 [G] 69.41
BZ:53 [VAL] B5:3857 [G] 4.61 B5:3901 [C] 82.5
BZ:54 [THR] B5:3856 [A] 3.54 B5:3902 [G] 75.91
BZ:54 [THR] B5:3857 [G] 3.44 B5:3901 [C] 75.91
BZ:55 [ALA] B5:3856 [A] 4.86 B5:3902 [G] 54.62
BZ:55 [ALA] B5:3857 [G] 2.94 B5:3901 [C] 54.62
BZ:55 [ALA] B5:3858 [C] 4.3 B5:3900 [G] 54.62
BZ:56 [ALA] B5:3857 [G] 4.7 B5:3901 [C] 35.3
BZ:58 [GLY] B5:3895 [C] 3.44 B5:3863 [G] 67.16
BZ:58 [GLY] B5:3896 [G] 4.02 B5:3862 [G] 67.16
BZ:59 [LYS] B5:3893 [G] 3.84 B5:3865 [C] 54.32
BZ:59 [LYS] B5:3894 [C] 2.34 B5:3864 [G] 54.32
BZ:59 [LYS] B5:3895 [C] 3.21 B5:3863 [G] 54.32
BZ:60 [LYS] B5:3894 [C] 4.48 B5:3864 [G] 59.81
BZ:60 [LYS] B5:3895 [C] 3.09 B5:3863 [G] 59.81
BZ:61 [LYS] B5:2599 [G] 3.65 B5:2432 [C] 59.38
BZ:61 [LYS] B5:3895 [C] 4.56 B5:3863 [G] 59.38
BZ:61 [LYS] B5:3896 [G] 4.98 B5:3862 [G] 59.38
BZ:64 [LYS] B5:2601 [G] 2.96 58.74
BZ:64 [LYS] B5:2602 [G] 3.07 base:SC 58.74
BZ:64 [LYS] B5:2603 [G] 3.24 base:SC 58.74
BZ:65 [ARG] B5:2598 [A] 3.16 B5:2433 [G] 89.3
BZ:65 [ARG] B5:2599 [G] 4.56 B5:2432 [C] 89.3
BZ:67 [LYS] B5:2416 [A] 4.84 B5:2604 [U] 57.45
BZ:67 [LYS] B5:2417 [G] 2.96 B5:2605 [G] 57.45
BZ:67 [LYS] B5:2603 [G] 4.33 57.45
BZ:69 [LYS] B5:2419 [G] 3.9 B5:2428 [C] 62.15
BZ:69 [LYS] B5:2420 [C] 3.02 B5:2427 [G] 62.15
BZ:73 [LYS] B5:2422 [G] 3.37 B5:2425 [A] 93.03
BZ:73 [LYS] B5:2423 [U] 3.94 93.03
BZ:73 [LYS] B5:2424 [A] 2.9 93.03
BZ:74 [VAL] B5:2423 [U] 3.14 44.42
BZ:75 [TYR] B5:2423 [U] 3.82 65.88
BZ:75 [TYR] B5:2424 [A] 3.37 65.88
BZ:76 [ASN] B5:2423 [U] 3.06 base:SC, sugar:BB 98.35
BZ:76 [ASN] B5:2498 [C] 3.23 B5:2522 [G] 98.35
BZ:76 [ASN] B5:2499 [U] 2.78 B5:2521 [A] 98.35
BZ:78 [ASN] B5:2498 [C] 4.57 B5:2522 [G] 75.4
BZ:78 [ASN] B5:2499 [U] 2.55 B5:2521 [A] 75.4
BZ:79 [HIS] B5:2423 [U] 2.57 sugar:SC 98.9
BZ:79 [HIS] B5:2424 [A] 3.04 98.9
BZ:79 [HIS] B5:2497 [C] 4.36 B5:2523 [G] 98.9
BZ:79 [HIS] B5:2498 [C] 3.19 B5:2522 [G] 98.9
BZ:101 [PHE] B5:2422 [G] 4.5 B5:2425 [A] 35.66
BZ:107 [LYS] B5:2421 [G] 3.01 B5:2426 [C] 64.86
BZ:107 [LYS] B5:2422 [G] 3.06 B5:2425 [A] 64.86
BZ:108 [ARG] B5:2398 [G] 3.02 B5:2415 [C] sugar:SC 35.39
BZ:111 [ARG] B5:2420 [C] 3.13 B5:2427 [G] 44.21
BZ:111 [ARG] B5:2421 [G] 2.94 B5:2426 [C] 44.21
BZ:112 [ARG] B5:2398 [G] 4.66 B5:2415 [C] 50.88
BZ:112 [ARG] B5:2415 [C] 2.81 B5:2398 [G] sugar:SC 50.88
BZ:112 [ARG] B5:2416 [A] 3.53 B5:2604 [U] 50.88
BZ:115 [LYS] B5:2416 [A] 3.27 B5:2604 [U] 56.18
BZ:115 [LYS] B5:2417 [G] 3.75 B5:2605 [G] 56.18
BZ:133 [LYS] B5:2596 [G] 3.15 74.29
BZ:133 [LYS] B5:2597 [G] 2.82 B5:2434 [A] 74.29
BZ:134 [LEU] B5:2596 [G] 4.85 94.16
BZ:135 [ARG] B5:2595 [G] 3.94 B5:2436 [C] 71.96
BZ:135 [ARG] B5:2596 [G] 3.37 71.96
BZ:135 [ARG] B5:3850 [G] 2.96 base:BB 71.96
BZ:135 [ARG] B5:3851 [C] 3.28 71.96
BZ:135 [ARG] B5:3852 [G] 3.54 71.96
BZ:136 [PHE] B5:2595 [G] 4.96 B5:2436 [C] 86.21
BZ:136 [PHE] B5:3850 [G] 2.41 sugar:SC 86.21
BZ:136 [PHE] B5:3851 [C] 3.33 86.21

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group50 7O7Y_BZ_B5 BZ: 60s ribosomal protein l27, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1TXF6 SH3 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_Y_3 7O7Y_BZ_B5 0.74 0.92 0.95 0.48 SH3 compare
6AZ3_Y_2 7O7Y_BZ_B5 0.56 0.91 2.01 0.33 SH3 Eukaryotic large subunit ribosomal RNA compare