RNAprotDB

All interfaces > All interologs > Interface groups > group51 > 6AZ3_g_1

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6AZ3_g
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
g:42 [TYR] 1:664 [C] 4.21 1:469 [A] 57.22
g:42 [TYR] 1:1235 [A] 4.31 1:1234 [A] 57.22
g:43 [THR] 1:1399 [C] 4.27 1:1227 [U] 72.31
g:44 [ARG] 1:665 [C] 3.49 1:468 [G] 96.4
g:44 [ARG] 1:666 [C] 3.4 1:467 [G] 96.4
g:44 [ARG] 1:1234 [A] 3.53 1:1235 [A] 96.4
g:44 [ARG] 1:1235 [A] 3.25 1:1234 [A] 96.4
g:44 [ARG] 1:1398 [C] 4.44 1:1228 [G] 96.4
g:44 [ARG] 1:1399 [C] 3.56 1:1227 [U] 96.4
g:45 [GLY] 1:1205 [G] 4.26 1:1212 [C] 74.33
g:45 [GLY] 1:1235 [A] 4.08 1:1234 [A] 74.33
g:45 [GLY] 1:1399 [C] 3.4 1:1227 [U] 74.33
g:46 [LEU] 1:666 [C] 4.09 1:467 [G] 50.22
g:46 [LEU] 1:1205 [G] 3.25 1:1212 [C] 50.22
g:46 [LEU] 1:1206 [A] 3.35 50.22
g:46 [LEU] 1:1234 [A] 3.78 1:1235 [A] 50.22
g:46 [LEU] 1:1235 [A] 3.38 1:1234 [A] 50.22
g:46 [LEU] 1:1399 [C] 4.32 1:1227 [U] 50.22
g:47 [HIS] 1:666 [C] 3.27 1:467 [G] 57.78
g:47 [HIS] 1:1204 [G] 3.33 1:1213 [C] 57.78
g:47 [HIS] 1:1205 [G] 3.18 1:1212 [C] 57.78
g:47 [HIS] 1:1399 [C] 3.17 1:1227 [U] 57.78
g:47 [HIS] 1:1400 [A] 3.92 1:1225 [U] 57.78
g:48 [GLY] 1:665 [C] 3.62 1:468 [G] 64.3
g:48 [GLY] 1:666 [C] 3.72 1:467 [G] 64.3
g:49 [GLN] 1:664 [C] 2.35 1:469 [A] base:SC, sugar:SC 85.63
g:49 [GLN] 1:665 [C] 3.17 1:468 [G] sugar:BB 85.63
g:50 [THR] 1:1400 [A] 3.49 1:1225 [U] 37.76
g:51 [LYS] 1:469 [A] 4.74 1:664 [C] 29.12
g:51 [LYS] 1:470 [A] 2.84 1:663 [C] base:SC 29.12
g:51 [LYS] 1:471 [G] 4.56 1:662 [C] 29.12
g:51 [LYS] 1:664 [C] 3.74 1:469 [A] 29.12
g:52 [GLN] 1:1220 [G] 4.91 1:1406 [C] 66.1
g:52 [GLN] 1:1221 [G] 2.57 1:1405 [U] 66.1
g:52 [GLN] 1:1222 [A] 3.7 1:1404 [U] 66.1
g:55 [LEU] 1:1235 [A] 4.0 1:1234 [A] 81.33
g:55 [LEU] 1:1236 [A] 4.16 81.33
g:57 [ARG] 1:1238 [C] 2.72 base:SC 55.36
g:61 [VAL] 1:1238 [C] 4.59 87.45
g:62 [ASN] 1:1238 [C] 3.43 46.18
g:64 [ARG] 1:1397 [C] 3.78 1:1229 [G] 46.61
g:64 [ARG] 1:1398 [C] 3.46 1:1228 [G] 46.61
g:71 [VAL] 1:560 [G] 4.99 1:500 [C] 59.15
g:71 [VAL] 1:561 [G] 3.78 1:499 [C] 59.15
g:72 [GLY] 1:561 [G] 4.31 1:499 [C] 96.47
g:74 [ARG] 1:491 [A] 4.09 1:643 [U] 70.19
g:74 [ARG] 1:492 [G] 3.39 1:642 [U] 70.19
g:74 [ARG] 1:493 [A] 4.8 1:641 [G] 70.19
g:79 [TYR] 1:472 [U] 3.2 1:661 [G] 71.18
g:79 [TYR] 1:473 [A] 2.66 1:660 [U] 71.18
g:80 [HIS] 1:473 [A] 4.94 1:660 [U] 47.83
g:81 [GLY] 1:473 [A] 4.07 1:660 [U] 63.21
g:81 [GLY] 1:474 [C] 3.97 1:659 [G] 63.21
g:82 [LYS] 1:473 [A] 3.71 1:660 [U] 53.79
g:82 [LYS] 1:474 [C] 2.96 1:659 [G] 53.79
g:83 [LYS] 1:474 [C] 2.93 1:659 [G] 52.1
g:83 [LYS] 1:475 [C] 2.73 1:658 [G] 52.1
g:85 [LYS] 1:473 [A] 4.61 1:660 [U] 34.14
g:85 [LYS] 1:474 [C] 3.43 1:659 [G] 34.14
g:86 [ARG] 1:646 [C] 2.96 1:487 [G] 21.48
g:86 [ARG] 1:647 [G] 2.67 1:486 [C] 21.48
g:86 [ARG] 1:652 [A] 4.53 1:482 [U] 21.48
g:86 [ARG] 1:653 [A] 3.38 1:481 [U] 21.48
g:86 [ARG] 1:654 [A] 3.71 1:480 [U] 21.48
g:87 [CYS] 1:645 [G] 4.85 1:489 [C] 16.02
g:87 [CYS] 1:646 [C] 4.78 1:487 [G] 16.02
g:88 [VAL] 1:645 [G] 3.36 1:489 [C] 17.52
g:89 [ARG] 1:644 [G] 3.72 1:490 [C] 6.49
g:89 [ARG] 1:645 [G] 3.27 1:489 [C] sugar:BB 6.49
g:89 [ARG] 1:646 [C] 3.42 1:487 [G] 6.49
g:90 [TRP] 1:645 [G] 4.32 1:489 [C] 51.33
g:90 [TRP] 1:646 [C] 3.38 1:487 [G] 51.33
g:90 [TRP] 1:647 [G] 4.35 1:486 [C] 51.33
g:91 [SER] 1:646 [C] 2.97 1:487 [G] 48.6
g:91 [SER] 1:647 [G] 2.7 1:486 [C] 48.6
g:92 [LYS] 1:645 [G] 3.16 1:489 [C] 30.44
g:92 [LYS] 1:646 [C] 2.87 1:487 [G] 30.44
g:93 [ALA] 1:646 [C] 4.99 1:487 [G] 40.99
g:101 [ARG] 1:473 [A] 3.43 1:660 [U] 84.28
g:101 [ARG] 1:474 [C] 2.91 1:659 [G] 84.28
g:103 [LEU] 1:471 [G] 4.71 1:662 [C] 79.98
g:103 [LEU] 1:472 [U] 4.22 1:661 [G] 79.98
g:106 [ARG] 1:492 [G] 3.05 1:642 [U] 66.08
g:106 [ARG] 1:493 [A] 3.22 1:641 [G] 66.08
g:109 [ARG] 1:1222 [A] 4.79 1:1404 [U] 67.66
g:109 [ARG] 1:1223 [U] 2.74 1:1403 [A] 67.66
g:109 [ARG] 1:1224 [A] 2.72 1:1402 [U] 67.66
g:109 [ARG] 1:1398 [C] 4.91 1:1228 [G] 67.66
g:110 [PRO] 1:1398 [C] 3.63 1:1228 [G] 37.17
g:111 [HIS] 1:1235 [A] 3.1 1:1234 [A] 99.0
g:111 [HIS] 1:1236 [A] 3.55 99.0
g:111 [HIS] 1:1397 [C] 4.55 1:1229 [G] 99.0
g:111 [HIS] 1:1398 [C] 3.3 1:1228 [G] 99.0
g:111 [HIS] 1:1399 [C] 3.85 1:1227 [U] 99.0
g:112 [GLY] 1:1236 [A] 3.84 91.63
g:112 [GLY] 1:1237 [A] 3.91 1:1387 [U] 91.63
g:112 [GLY] 1:1397 [C] 3.39 1:1229 [G] 91.63
g:112 [GLY] 1:1398 [C] 2.93 1:1228 [G] 91.63
g:113 [ASN] 1:1236 [A] 3.89 66.44
g:113 [ASN] 1:1237 [A] 2.95 1:1387 [U] 66.44
g:113 [ASN] 1:1238 [C] 3.71 66.44
g:113 [ASN] 1:1388 [U] 3.79 66.44
g:113 [ASN] 1:1396 [G] 2.53 1:1230 [C] base:SC, sugar:SC 66.44
g:113 [ASN] 1:1397 [C] 3.75 1:1229 [G] 66.44
g:114 [ALA] 1:1236 [A] 4.89 70.36
g:114 [ALA] 1:1237 [A] 2.89 1:1387 [U] 70.36
g:114 [ALA] 1:1238 [C] 3.29 70.36
g:116 [MET] 1:1236 [A] 3.27 54.41
g:118 [ARG] 1:1223 [U] 4.58 1:1403 [A] 76.31
g:118 [ARG] 1:1398 [C] 3.47 1:1228 [G] 76.31
g:118 [ARG] 1:1399 [C] 3.19 1:1227 [U] 76.31
g:120 [LYS] 1:563 [C] 4.85 42.03
g:120 [LYS] 1:564 [U] 3.65 42.03
g:120 [LYS] 1:1221 [G] 4.12 1:1405 [U] 42.03
g:120 [LYS] 1:1222 [A] 2.61 1:1404 [U] 42.03
g:121 [PHE] 1:563 [C] 4.0 82.19
g:122 [ASN] 1:491 [A] 4.77 1:643 [U] 7.1
g:122 [ASN] 1:492 [G] 4.03 1:642 [U] 7.1
g:122 [ASN] 1:563 [C] 3.33 base/AA stacks 7.1
g:123 [GLY] 1:471 [G] 4.18 1:662 [C] 41.21
g:123 [GLY] 1:563 [C] 3.46 41.21
g:124 [ALA] 1:471 [G] 3.47 1:662 [C] 57.61
g:124 [ALA] 1:472 [U] 4.0 1:661 [G] 57.61
g:125 [SER] 1:470 [A] 2.9 1:663 [C] sugar:SC 77.15
g:125 [SER] 1:471 [G] 2.95 1:662 [C] sugar:SC 77.15
g:125 [SER] 1:472 [U] 4.9 1:661 [G] 77.15
g:126 [VAL] 1:471 [G] 3.47 1:662 [C] 78.68
g:127 [PRO] 1:471 [G] 3.32 1:662 [C] 80.96
g:127 [PRO] 1:472 [U] 3.65 1:661 [G] 80.96
g:128 [ALA] 1:663 [C] 3.07 1:470 [A] base:BB 55.58
g:128 [ALA] 1:664 [C] 3.65 1:469 [A] 55.58
g:129 [SER] 1:471 [G] 4.97 1:662 [C] 57.55
g:129 [SER] 1:663 [C] 3.54 1:470 [A] 57.55
g:131 [ILE] 1:664 [C] 4.09 1:469 [A] 59.07
g:141 [PRO] 1:493 [A] 3.35 1:641 [G] 62.93
g:143 [GLN] 1:560 [G] 3.29 1:500 [C] 6.49
g:143 [GLN] 1:561 [G] 3.56 1:499 [C] 6.49

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group51 6AZ3_g_1 g: Ribosomal protein l35ae family protein, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A3Q8II82 Alanine racemase-C Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_g_1 7O7Y_Bf_B5 0.77 0.91 1.33 0.4 Alanine racemase-C Eukaryotic large subunit ribosomal RNA compare