Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_g
|
6AZ3_1
|
7O7Y_Bf
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
g:82 [LYS] | 1:473 [A] | Bf:54 [LYS] | B5:442 [G] | ✔ |
g:82 [LYS] | 1:474 [C] | Bf:54 [LYS] | B5:443 [G] | ✔ |
g:88 [VAL] | 1:645 [G] | Bf:60 [PRO] | B5:1235 [G] | ✔ |
g:47 [HIS] | 1:666 [C] | Bf:19 [ARG] | B5:1255 [G] | ✔ |
g:47 [HIS] | 1:1204 [G] | Bf:19 [ARG] | B5:1824 [G] | ✔ |
g:47 [HIS] | 1:1205 [G] | Bf:19 [ARG] | B5:1825 [G] | ✔ |
g:131 [ILE] | 1:664 [C] | Bf:97 [ILE] | B5:1253 [C] | ✔ |
g:55 [LEU] | 1:1235 [A] | Bf:27 [LEU] | B5:1855 [G] | ✔ |
g:55 [LEU] | 1:1236 [A] | Bf:27 [LEU] | B5:1856 [A] | ✔ |
g:110 [PRO] | 1:1398 [C] | Bf:77 [ALA] | B5:2006 [C] | ✔ |
g:116 [MET] | 1:1236 [A] | Bf:83 [MET] | B5:1856 [A] | ✔ |
g:45 [GLY] | 1:1235 [A] | Bf:17 [GLY] | B5:1855 [G] | ✔ |
g:45 [GLY] | 1:1399 [C] | Bf:17 [GLY] | B5:2007 [C] | ✔ |
g:42 [TYR] | 1:664 [C] | Bf:14 [TYR] | B5:1253 [C] | ✔ |
g:42 [TYR] | 1:1235 [A] | Bf:14 [TYR] | B5:1855 [G] | ✔ |
g:43 [THR] | 1:1399 [C] | Bf:15 [LYS] | B5:2007 [C] | ✔ |
g:143 [GLN] | 1:560 [G] | Bf:109 [ARG] | B5:850 [G] | ✔ |
g:143 [GLN] | 1:561 [G] | Bf:109 [ARG] | B5:851 [G] | ✔ |
g:103 [LEU] | 1:472 [U] | Bf:70 [ILE] | B5:441 [G] | ✔ |
g:71 [VAL] | 1:561 [G] | Bf:43 [LEU] | B5:851 [G] | ✔ |
g:50 [THR] | 1:1400 [A] | Bf:22 [ARG] | B5:2008 [A] | ✔ |
g:141 [PRO] | 1:493 [A] | Bf:107 [PRO] | B5:704 [G] | ✔ |
g:101 [ARG] | 1:473 [A] | Bf:68 [ARG] | B5:442 [G] | ✔ |
g:101 [ARG] | 1:474 [C] | Bf:68 [ARG] | B5:443 [G] | ✔ |
g:109 [ARG] | 1:1223 [U] | Bf:76 [ARG] | B5:1843 [G] | ✔ |
g:109 [ARG] | 1:1224 [A] | Bf:76 [ARG] | B5:1844 [U] | ✔ |
g:109 [ARG] | 1:1398 [C] | Bf:76 [ARG] | B5:2006 [C] | ✔ |
g:72 [GLY] | 1:561 [G] | Bf:44 [GLY] | B5:851 [G] | ✔ |
g:52 [GLN] | 1:1221 [G] | Bf:24 [HIS] | B5:1841 [G] | ✔ |
g:52 [GLN] | 1:1222 [A] | Bf:24 [HIS] | B5:1842 [G] | ✔ |
g:111 [HIS] | 1:1235 [A] | Bf:78 [HIS] | B5:1855 [G] | ✔ |
g:111 [HIS] | 1:1236 [A] | Bf:78 [HIS] | B5:1856 [A] | ✔ |
g:111 [HIS] | 1:1397 [C] | Bf:78 [HIS] | B5:2005 [C] | ✔ |
g:111 [HIS] | 1:1398 [C] | Bf:78 [HIS] | B5:2006 [C] | ✔ |
g:111 [HIS] | 1:1399 [C] | Bf:78 [HIS] | B5:2007 [C] | ✔ |
g:128 [ALA] | 1:663 [C] | Bf:94 [ALA] | B5:1252 [C] | ✔ |
g:128 [ALA] | 1:664 [C] | Bf:94 [ALA] | B5:1253 [C] | ✔ |
g:48 [GLY] | 1:665 [C] | Bf:20 [ASN] | B5:1254 [C] | ✔ |
g:48 [GLY] | 1:666 [C] | Bf:20 [ASN] | B5:1255 [G] | ✔ |
g:64 [ARG] | 1:1397 [C] | Bf:36 [ARG] | B5:2005 [C] | ✔ |
g:64 [ARG] | 1:1398 [C] | Bf:36 [ARG] | B5:2006 [C] | ✔ |
g:62 [ASN] | 1:1238 [C] | Bf:34 [TYR] | B5:1858 [G] | ✔ |
g:113 [ASN] | 1:1236 [A] | Bf:80 [ASN] | B5:1856 [A] | ✔ |
g:113 [ASN] | 1:1237 [A] | Bf:80 [ASN] | B5:1857 [U] | ✔ |
g:113 [ASN] | 1:1238 [C] | Bf:80 [ASN] | B5:1858 [G] | ✔ |
g:113 [ASN] | 1:1396 [G] | Bf:80 [ASN] | B5:2004 [G] | ✔ |
g:113 [ASN] | 1:1397 [C] | Bf:80 [ASN] | B5:2005 [C] | ✔ |
g:57 [ARG] | 1:1238 [C] | Bf:29 [LYS] | B5:1858 [G] | ✔ |
g:127 [PRO] | 1:471 [G] | Bf:93 [PRO] | B5:440 [U] | ✔ |
g:127 [PRO] | 1:472 [U] | Bf:93 [PRO] | B5:441 [G] | ✔ |
g:46 [LEU] | 1:666 [C] | Bf:18 [LEU] | B5:1255 [G] | ✔ |
g:46 [LEU] | 1:1205 [G] | Bf:18 [LEU] | B5:1825 [G] | ✔ |
g:46 [LEU] | 1:1206 [A] | Bf:18 [LEU] | B5:1826 [G] | ✔ |
g:46 [LEU] | 1:1234 [A] | Bf:18 [LEU] | B5:1854 [C] | ✔ |
g:46 [LEU] | 1:1235 [A] | Bf:18 [LEU] | B5:1855 [G] | ✔ |
g:49 [GLN] | 1:664 [C] | Bf:21 [GLN] | B5:1253 [C] | ✔ |
g:49 [GLN] | 1:665 [C] | Bf:21 [GLN] | B5:1254 [C] | ✔ |
g:122 [ASN] | 1:491 [A] | Bf:89 [ARG] | B5:702 [G] | ✔ |
g:122 [ASN] | 1:492 [G] | Bf:89 [ARG] | B5:703 [C] | ✔ |
g:124 [ALA] | 1:471 [G] | Bf:90 [SER] | B5:440 [U] | ✔ |
g:124 [ALA] | 1:472 [U] | Bf:90 [SER] | B5:441 [G] | ✔ |
g:74 [ARG] | 1:491 [A] | Bf:46 [ARG] | B5:702 [G] | ✔ |
g:74 [ARG] | 1:492 [G] | Bf:46 [ARG] | B5:703 [C] | ✔ |
g:125 [SER] | 1:470 [A] | Bf:91 [ASN] | B5:439 [G] | ✔ |
g:125 [SER] | 1:471 [G] | Bf:91 [ASN] | B5:440 [U] | ✔ |
g:125 [SER] | 1:472 [U] | Bf:91 [ASN] | B5:441 [G] | ✔ |
g:126 [VAL] | 1:471 [G] | Bf:92 [LEU] | B5:440 [U] | ✔ |
g:51 [LYS] | 1:469 [A] | Bf:23 [GLU] | B5:438 [G] | ✔ |
g:51 [LYS] | 1:470 [A] | Bf:23 [GLU] | B5:439 [G] | ✔ |
g:51 [LYS] | 1:664 [C] | Bf:23 [GLU] | B5:1253 [C] | ✔ |
g:89 [ARG] | 1:645 [G] | Bf:61 [GLY] | B5:1235 [G] | ✔ |
g:89 [ARG] | 1:646 [C] | Bf:61 [GLY] | B5:1236 [C] | ✔ |
g:83 [LYS] | 1:474 [C] | Bf:55 [ASN] | B5:443 [G] | ✔ |
g:83 [LYS] | 1:475 [C] | Bf:55 [ASN] | B5:444 [G] | ✔ |
g:120 [LYS] | 1:563 [C] | Bf:87 [LYS] | B5:853 [C] | ✔ |
g:120 [LYS] | 1:1221 [G] | Bf:87 [LYS] | B5:1841 [G] | ✔ |
g:120 [LYS] | 1:1222 [A] | Bf:87 [LYS] | B5:1842 [G] | ✔ |
g:86 [ARG] | 1:646 [C] | Bf:58 [VAL] | B5:1236 [C] | ✔ |
g:86 [ARG] | 1:652 [A] | Bf:58 [VAL] | B5:1241 [U] | ✔ |
g:86 [ARG] | 1:653 [A] | Bf:58 [VAL] | B5:1242 [C] | ✔ |
g:118 [ARG] | 1:1223 [U] | Bf:85 [ARG] | B5:1843 [G] | ✔ |
g:118 [ARG] | 1:1398 [C] | Bf:85 [ARG] | B5:2006 [C] | ✔ |
g:118 [ARG] | 1:1399 [C] | Bf:85 [ARG] | B5:2007 [C] | ✔ |
g:81 [GLY] | 1:473 [A] | Bf:53 [ALA] | B5:442 [G] | ✔ |
g:81 [GLY] | 1:474 [C] | Bf:53 [ALA] | B5:443 [G] | ✔ |
g:44 [ARG] | 1:665 [C] | Bf:16 [ARG] | B5:1254 [C] | ✔ |
g:44 [ARG] | 1:1234 [A] | Bf:16 [ARG] | B5:1854 [C] | ✔ |
g:44 [ARG] | 1:1235 [A] | Bf:16 [ARG] | B5:1855 [G] | ✔ |
g:44 [ARG] | 1:1398 [C] | Bf:16 [ARG] | B5:2006 [C] | ✔ |
g:44 [ARG] | 1:1399 [C] | Bf:16 [ARG] | B5:2007 [C] | ✔ |
g:114 [ALA] | 1:1236 [A] | Bf:81 [SER] | B5:1856 [A] | ✔ |
g:114 [ALA] | 1:1237 [A] | Bf:81 [SER] | B5:1857 [U] | ✔ |
g:114 [ALA] | 1:1238 [C] | Bf:81 [SER] | B5:1858 [G] | ✔ |
g:112 [GLY] | 1:1236 [A] | Bf:79 [GLY] | B5:1856 [A] | ✔ |
g:112 [GLY] | 1:1237 [A] | Bf:79 [GLY] | B5:1857 [U] | ✔ |
g:112 [GLY] | 1:1397 [C] | Bf:79 [GLY] | B5:2005 [C] | ✔ |
g:112 [GLY] | 1:1398 [C] | Bf:79 [GLY] | B5:2006 [C] | ✔ |
g:79 [TYR] | 1:472 [U] | Bf:51 [TYR] | B5:441 [G] | ✔ |
g:79 [TYR] | 1:473 [A] | Bf:51 [TYR] | B5:442 [G] | ✔ |
g:129 [SER] | 1:663 [C] | Bf:95 [LYS] | B5:1252 [C] | ✔ |
g:80 [HIS] | 1:473 [A] | Bf:52 [LYS] | B5:442 [G] | ❌ 7O7Y_Bf_B5 |
g:47 [HIS] | 1:1399 [C] | Bf:19 [ARG] | B5:2007 [C] | ❌ 7O7Y_Bf_B5 |
g:47 [HIS] | 1:1400 [A] | Bf:19 [ARG] | B5:2008 [A] | ❌ 7O7Y_Bf_B5 |
g:106 [ARG] | 1:492 [G] | Bf:73 [LYS] | B5:703 [C] | ❌ 7O7Y_Bf_B5 |
g:106 [ARG] | 1:493 [A] | Bf:73 [LYS] | B5:704 [G] | ❌ 7O7Y_Bf_B5 |
g:45 [GLY] | 1:1205 [G] | Bf:17 [GLY] | B5:1825 [G] | ❌ 7O7Y_Bf_B5 |
g:85 [LYS] | 1:473 [A] | Bf:57 [THR] | B5:442 [G] | ❌ 7O7Y_Bf_B5 |
g:85 [LYS] | 1:474 [C] | Bf:57 [THR] | B5:443 [G] | ❌ 7O7Y_Bf_B5 |
g:103 [LEU] | 1:471 [G] | Bf:70 [ILE] | B5:440 [U] | ❌ 7O7Y_Bf_B5 |
g:71 [VAL] | 1:560 [G] | Bf:43 [LEU] | B5:850 [G] | ❌ 7O7Y_Bf_B5 |
g:109 [ARG] | 1:1222 [A] | Bf:76 [ARG] | B5:1842 [G] | ❌ 7O7Y_Bf_B5 |
g:46 [LEU] | 1:1399 [C] | Bf:18 [LEU] | B5:2007 [C] | ❌ 7O7Y_Bf_B5 |
g:122 [ASN] | 1:563 [C] | Bf:89 [ARG] | B5:853 [C] | ❌ 7O7Y_Bf_B5 |
g:74 [ARG] | 1:493 [A] | Bf:46 [ARG] | B5:704 [G] | ❌ 7O7Y_Bf_B5 |
g:51 [LYS] | 1:471 [G] | Bf:23 [GLU] | B5:440 [U] | ❌ 7O7Y_Bf_B5 |
g:87 [CYS] | 1:645 [G] | Bf:59 [THR] | B5:1235 [G] | ❌ 7O7Y_Bf_B5 |
g:87 [CYS] | 1:646 [C] | Bf:59 [THR] | B5:1236 [C] | ❌ 7O7Y_Bf_B5 |
g:86 [ARG] | 1:647 [G] | Bf:58 [VAL] | B5:1237 [G] | ❌ 7O7Y_Bf_B5 |
g:44 [ARG] | 1:666 [C] | Bf:16 [ARG] | B5:1255 [G] | ❌ 7O7Y_Bf_B5 |
g:129 [SER] | 1:471 [G] | Bf:95 [LYS] | B5:440 [U] | ❌ 7O7Y_Bf_B5 |
g:42 [TYR] | 1:470 [A] | Bf:14 [TYR] | B5:439 [G] | ❌ 6AZ3_g_1 |
g:43 [THR] | 1:1400 [A] | Bf:15 [LYS] | B5:2008 [A] | ❌ 6AZ3_g_1 |
g:43 [THR] | 1:1398 [C] | Bf:15 [LYS] | B5:2006 [C] | ❌ 6AZ3_g_1 |
g:45 [GLY] | 1:1400 [A] | Bf:17 [GLY] | B5:2008 [A] | ❌ 6AZ3_g_1 |
g:46 [LEU] | 1:665 [C] | Bf:18 [LEU] | B5:1254 [C] | ❌ 6AZ3_g_1 |
g:47 [HIS] | 1:665 [C] | Bf:19 [ARG] | B5:1254 [C] | ❌ 6AZ3_g_1 |
g:47 [HIS] | 1:1206 [A] | Bf:19 [ARG] | B5:1826 [G] | ❌ 6AZ3_g_1 |
g:48 [GLY] | 1:1204 [G] | Bf:20 [ASN] | B5:1824 [G] | ❌ 6AZ3_g_1 |
g:48 [GLY] | 1:1400 [A] | Bf:20 [ASN] | B5:2008 [A] | ❌ 6AZ3_g_1 |
g:49 [GLN] | 1:469 [A] | Bf:21 [GLN] | B5:438 [G] | ❌ 6AZ3_g_1 |
g:51 [LYS] | 1:665 [C] | Bf:23 [GLU] | B5:1254 [C] | ❌ 6AZ3_g_1 |
g:82 [LYS] | 1:475 [C] | Bf:54 [LYS] | B5:444 [G] | ❌ 6AZ3_g_1 |
g:85 [LYS] | 1:653 [A] | Bf:57 [THR] | B5:1242 [C] | ❌ 6AZ3_g_1 |
g:85 [LYS] | 1:652 [A] | Bf:57 [THR] | B5:1241 [U] | ❌ 6AZ3_g_1 |
g:101 [ARG] | 1:472 [U] | Bf:68 [ARG] | B5:441 [G] | ❌ 6AZ3_g_1 |
g:106 [ARG] | 1:563 [C] | Bf:73 [LYS] | B5:853 [C] | ❌ 6AZ3_g_1 |
g:128 [ALA] | 1:470 [A] | Bf:94 [ALA] | B5:439 [G] | ❌ 6AZ3_g_1 |
g:128 [ALA] | 1:471 [G] | Bf:94 [ALA] | B5:440 [U] | ❌ 6AZ3_g_1 |
g:129 [SER] | 1:472 [U] | Bf:95 [LYS] | B5:441 [G] | ❌ 6AZ3_g_1 |
g:52 [GLN] | 1:1220 [G] | Bf:24 [HIS] | B5:1840 [C] | ❌ 7O7Y_B5:1840 no longer at interface |
g:89 [ARG] | 1:644 [G] | Bf:61 [GLY] | B5:1234 [G] | ❌ 7O7Y_B5:1234 no longer at interface |
g:120 [LYS] | 1:564 [U] | Bf:87 [LYS] | B5:854 [C] | ❌ 7O7Y_B5:854 no longer at interface |
g:86 [ARG] | 1:654 [A] | Bf:58 [VAL] | B5:1243 [G] | ❌ 7O7Y_B5:1243 no longer at interface |
g:47 [HIS] | 1:1208 [U] | Bf:19 [ARG] | B5:1828 [U] | ❌ 6AZ3_1:1208 no longer at interface |
g:47 [HIS] | 1:1207 [A] | Bf:19 [ARG] | B5:1827 [A] | ❌ 6AZ3_1:1207 no longer at interface |
g:48 [GLY] | 1:1203 [C] | Bf:20 [ASN] | B5:1823 [C] | ❌ 6AZ3_1:1203 no longer at interface |
g:50 [THR] | 1:1401 [U] | Bf:22 [ARG] | B5:2009 [U] | ❌ 6AZ3_1:1401 no longer at interface |
g:72 [GLY] | 1:562 [U] | Bf:44 [GLY] | B5:852 [G] | ❌ 6AZ3_1:562 no longer at interface |
g:106 [ARG] | 1:562 [U] | Bf:73 [LYS] | B5:852 [G] | ❌ 6AZ3_1:562 no longer at interface |
g:107 [VAL] | 1:562 [U] | Bf:74 [VAL] | B5:852 [G] | ❌ 6AZ3_g:107, 6AZ3_1:562 no longer at interface |
g:108 [THR] | 1:562 [U] | Bf:75 [THR] | B5:852 [G] | ❌ 6AZ3_g:108, 6AZ3_1:562 no longer at interface |
g:113 [ASN] | 1:1387 [U] | Bf:80 [ASN] | B5:2003 [G] | ❌ 6AZ3_1:1387 no longer at interface |
g:121 [PHE] | 1:563 [C] | Bf:88 [PHE] | B5:853 [C] | ❌ 7O7Y_Bf:88 no longer at interface |
g:61 [VAL] | 1:1238 [C] | Bf:33 [VAL] | B5:1858 [G] | ❌ 7O7Y_Bf:33 no longer at interface |
g:93 [ALA] | 1:646 [C] | Bf:62 [GLY] | B5:1236 [C] | ❌ 7O7Y_Bf:62 no longer at interface |
g:53 [THR] | 1:1222 [A] | Bf:25 [THR] | B5:1842 [G] | ❌ 6AZ3_g:53 no longer at interface |
g:68 [THR] | 1:560 [G] | Bf:40 [GLU] | B5:850 [G] | ❌ 6AZ3_g:68 no longer at interface |
g:84 [VAL] | 1:653 [A] | Bf:56 [ASN] | B5:1242 [C] | ❌ 6AZ3_g:84 no longer at interface |
g:84 [VAL] | 1:652 [A] | Bf:56 [ASN] | B5:1241 [U] | ❌ 6AZ3_g:84 no longer at interface |
g:94 [PRO] | 1:647 [G] | Bf:63 [LYS] | B5:1237 [G] | ❌ 6AZ3_g:94 no longer at interface |
g:97 [ARG] | 1:652 [A] | Bf:64 [PRO] | B5:1241 [U] | ❌ 6AZ3_g:97 no longer at interface |
g:107 [VAL] | 1:561 [G] | Bf:74 [VAL] | B5:851 [G] | ❌ 6AZ3_g:107 no longer at interface |
g:108 [THR] | 1:563 [C] | Bf:75 [THR] | B5:853 [C] | ❌ 6AZ3_g:108 no longer at interface |
g:108 [THR] | 1:561 [G] | Bf:75 [THR] | B5:851 [G] | ❌ 6AZ3_g:108 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Alanine racemase-C | Eukaryotic large subunit ribosomal RNA | 0.91 | 1.33 | 0.40 | 0.94 | 0.91 | 0.88 | 0.89 | 0.77 | 0.66 | 0.41 | 0.39 |
Other pairs involving 6AZ3_g_1 or 7O7Y_Bf_B5
Total number of entries: 2
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_g_1 | 7O7Y_Bf_B5 | 0.77 | 0.91 | 1.33 | 0.4 | Alanine racemase-C | Eukaryotic large subunit ribosomal RNA | compare |
6AZ3_g_6 | 7O7Y_Bf_B5 | 0.57 | 0.75 | 1.98 | 0.21 | Alanine racemase-C | compare |