RNAprotDB

All interfaces > All interologs > Interface groups > group51 > 7O7Y_Bf_B5

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_Bf
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bf:1 [MET] B5:4621 [U] 3.73 43.81
Bf:1 [MET] B5:4622 [C] 3.56 B5:4675 [G] 43.81
Bf:2 [SER] B5:4621 [U] 4.17 3.69
Bf:2 [SER] B5:4684 [G] 3.79 3.69
Bf:2 [SER] B5:4685 [U] 3.15 3.69
Bf:3 [GLY] B5:4684 [G] 2.41 base:BB, base:BB 4.72
Bf:3 [GLY] B5:4685 [U] 3.12 4.72
Bf:4 [ARG] B5:4500 [U] 3.69 69.84
Bf:4 [ARG] B5:4501 [G] 3.49 B5:4618 [C] 69.84
Bf:4 [ARG] B5:4684 [G] 3.54 69.84
Bf:4 [ARG] B5:4685 [U] 3.21 69.84
Bf:5 [LEU] B5:4684 [G] 2.97 base:BB 78.11
Bf:6 [TRP] B5:4500 [U] 3.46 57.46
Bf:6 [TRP] B5:4684 [G] 3.11 base:SC 57.46
Bf:6 [TRP] B5:4685 [U] 3.45 base:SC 57.46
Bf:8 [LYS] B5:4500 [U] 3.28 56.75
Bf:8 [LYS] B5:4501 [G] 3.27 B5:4618 [C] 56.75
Bf:14 [TYR] B5:439 [G] 4.88 B5:1252 [C] 64.92
Bf:14 [TYR] B5:1253 [C] 4.48 B5:438 [G] 64.92
Bf:14 [TYR] B5:1855 [G] 4.91 64.92
Bf:15 [LYS] B5:2006 [C] 4.78 B5:1848 [G] 81.89
Bf:15 [LYS] B5:2007 [C] 2.47 B5:1847 [A] 81.89
Bf:15 [LYS] B5:2008 [A] 4.63 B5:1845 [U] 81.89
Bf:16 [ARG] B5:1254 [C] 3.84 B5:437 [G] 97.63
Bf:16 [ARG] B5:1854 [C] 3.49 B5:1856 [A] 97.63
Bf:16 [ARG] B5:1855 [G] 3.18 97.63
Bf:16 [ARG] B5:2006 [C] 4.34 B5:1848 [G] 97.63
Bf:16 [ARG] B5:2007 [C] 3.19 B5:1847 [A] 97.63
Bf:17 [GLY] B5:1855 [G] 3.76 73.85
Bf:17 [GLY] B5:2007 [C] 3.96 B5:1847 [A] 73.85
Bf:17 [GLY] B5:2008 [A] 4.38 B5:1845 [U] 73.85
Bf:18 [LEU] B5:1254 [C] 4.27 B5:437 [G] 57.56
Bf:18 [LEU] B5:1255 [G] 3.75 B5:436 [C] 57.56
Bf:18 [LEU] B5:1825 [G] 3.79 B5:1832 [C] 57.56
Bf:18 [LEU] B5:1826 [G] 4.89 B5:1876 [C] 57.56
Bf:18 [LEU] B5:1854 [C] 3.5 B5:1856 [A] 57.56
Bf:18 [LEU] B5:1855 [G] 4.04 57.56
Bf:19 [ARG] B5:1254 [C] 3.91 B5:437 [G] 69.5
Bf:19 [ARG] B5:1255 [G] 3.1 B5:436 [C] 69.5
Bf:19 [ARG] B5:1824 [G] 4.76 B5:1833 [C] 69.5
Bf:19 [ARG] B5:1825 [G] 3.05 B5:1832 [C] 69.5
Bf:19 [ARG] B5:1826 [G] 2.59 B5:1876 [C] 69.5
Bf:19 [ARG] B5:1827 [A] 3.0 69.5
Bf:19 [ARG] B5:1828 [U] 3.46 69.5
Bf:20 [ASN] B5:1254 [C] 4.14 B5:437 [G] 58.24
Bf:20 [ASN] B5:1255 [G] 4.88 B5:436 [C] 58.24
Bf:20 [ASN] B5:1823 [C] 4.44 B5:1834 [G] 58.24
Bf:20 [ASN] B5:1824 [G] 2.52 B5:1833 [C] 58.24
Bf:20 [ASN] B5:2008 [A] 3.58 B5:1845 [U] 58.24
Bf:21 [GLN] B5:438 [G] 3.67 B5:1253 [C] 83.89
Bf:21 [GLN] B5:1253 [C] 2.57 B5:438 [G] base:SC, sugar:SC 83.89
Bf:21 [GLN] B5:1254 [C] 3.24 B5:437 [G] 83.89
Bf:22 [ARG] B5:2008 [A] 2.66 B5:1845 [U] 54.02
Bf:22 [ARG] B5:2009 [U] 4.7 B5:1822 [G] 54.02
Bf:23 [GLU] B5:438 [G] 2.64 B5:1253 [C] base:SC 48.01
Bf:23 [GLU] B5:439 [G] 3.21 B5:1252 [C] 48.01
Bf:23 [GLU] B5:1253 [C] 4.38 B5:438 [G] 48.01
Bf:23 [GLU] B5:1254 [C] 4.71 B5:437 [G] 48.01
Bf:24 [HIS] B5:1841 [G] 3.39 B5:2013 [C] 72.97
Bf:24 [HIS] B5:1842 [G] 3.14 B5:2012 [C] 72.97
Bf:25 [THR] B5:1842 [G] 4.0 B5:2012 [C] 71.29
Bf:27 [LEU] B5:1855 [G] 3.92 83.17
Bf:27 [LEU] B5:1856 [A] 4.64 B5:1854 [C] 83.17
Bf:29 [LYS] B5:1858 [G] 2.96 base:SC 57.33
Bf:34 [TYR] B5:1858 [G] 3.28 sugar:BB base/AA stacks 37.48
Bf:36 [ARG] B5:2005 [C] 3.84 B5:1849 [G] 46.87
Bf:36 [ARG] B5:2006 [C] 3.89 B5:1848 [G] 46.87
Bf:40 [GLU] B5:850 [G] 4.09 B5:712 [C] 5.08
Bf:43 [LEU] B5:851 [G] 3.93 B5:711 [U] 58.2
Bf:44 [GLY] B5:851 [G] 3.36 B5:711 [U] 94.9
Bf:44 [GLY] B5:852 [G] 3.54 B5:710 [C] 94.9
Bf:46 [ARG] B5:702 [G] 4.19 B5:1233 [C] 69.93
Bf:46 [ARG] B5:703 [C] 3.91 B5:1232 [G] 69.93
Bf:46 [ARG] B5:4682 [A] 3.57 sugar:SC 69.93
Bf:50 [VAL] B5:4499 [U] 4.87 B5:4686 [U] 66.9
Bf:50 [VAL] B5:4683 [C] 4.06 66.9
Bf:50 [VAL] B5:4684 [G] 4.94 66.9
Bf:51 [TYR] B5:441 [G] 3.21 B5:1250 [C] 61.81
Bf:51 [TYR] B5:442 [G] 2.56 B5:1249 [C] 61.81
Bf:52 [LYS] B5:4497 [G] 3.38 B5:4688 [G] 52.92
Bf:52 [LYS] B5:4498 [G] 2.79 B5:4687 [C] base:SC, base:SC 52.92
Bf:52 [LYS] B5:4499 [U] 3.9 B5:4686 [U] 52.92
Bf:53 [ALA] B5:442 [G] 3.65 B5:1249 [C] 56.21
Bf:53 [ALA] B5:443 [G] 3.63 B5:1248 [C] 56.21
Bf:54 [LYS] B5:442 [G] 4.11 B5:1249 [C] 27.92
Bf:54 [LYS] B5:443 [G] 3.23 B5:1248 [C] 27.92
Bf:54 [LYS] B5:444 [G] 3.12 B5:1246 [U] 27.92
Bf:54 [LYS] B5:4495 [U] 3.22 B5:4691 [G] 27.92
Bf:54 [LYS] B5:4496 [C] 3.51 B5:4690 [G] 27.92
Bf:55 [ASN] B5:443 [G] 3.01 B5:1248 [C] 51.94
Bf:55 [ASN] B5:444 [G] 3.19 B5:1246 [U] 51.94
Bf:56 [ASN] B5:1241 [U] 3.43 B5:450 [G] 13.55
Bf:56 [ASN] B5:1242 [C] 3.89 B5:448 [G] 13.55
Bf:57 [THR] B5:1241 [U] 4.12 B5:450 [G] 29.26
Bf:57 [THR] B5:1242 [C] 3.27 B5:448 [G] 29.26
Bf:58 [VAL] B5:1236 [C] 4.56 B5:699 [G] 0.0
Bf:58 [VAL] B5:1241 [U] 3.23 B5:450 [G] 0.0
Bf:58 [VAL] B5:1242 [C] 2.91 B5:448 [G] 0.0
Bf:58 [VAL] B5:4683 [C] 3.94 0.0
Bf:59 [THR] B5:4683 [C] 3.39 32.76
Bf:60 [PRO] B5:1235 [G] 4.15 B5:700 [C] 30.39
Bf:60 [PRO] B5:4682 [A] 3.33 30.39
Bf:60 [PRO] B5:4683 [C] 3.43 30.39
Bf:61 [GLY] B5:1235 [G] 3.77 B5:700 [C] 47.01
Bf:61 [GLY] B5:1236 [C] 4.8 B5:699 [G] 47.01
Bf:63 [LYS] B5:1237 [G] 5.0 B5:453 [G] 46.09
Bf:64 [PRO] B5:1241 [U] 3.88 B5:450 [G] 12.43
Bf:65 [ASN] B5:4683 [C] 4.01 62.48
Bf:66 [LYS] B5:4495 [U] 4.7 B5:4691 [G] 46.26
Bf:67 [THR] B5:4683 [C] 2.93 15.33
Bf:67 [THR] B5:4684 [G] 4.58 15.33
Bf:68 [ARG] B5:441 [G] 4.98 B5:1250 [C] 76.32
Bf:68 [ARG] B5:442 [G] 2.73 B5:1249 [C] 76.32
Bf:68 [ARG] B5:443 [G] 2.97 B5:1248 [C] 76.32
Bf:68 [ARG] B5:4683 [C] 4.29 76.32
Bf:69 [VAL] B5:4683 [C] 3.41 18.42
Bf:70 [ILE] B5:441 [G] 3.95 B5:1250 [C] 79.66
Bf:71 [TRP] B5:4682 [A] 3.1 base:SC 10.51
Bf:71 [TRP] B5:4683 [C] 3.85 10.51
Bf:73 [LYS] B5:852 [G] 3.04 B5:710 [C] 66.67
Bf:73 [LYS] B5:853 [C] 2.91 B5:709 [G] 66.67
Bf:74 [VAL] B5:851 [G] 4.48 B5:711 [U] 80.78
Bf:74 [VAL] B5:852 [G] 3.99 B5:710 [C] 80.78
Bf:75 [THR] B5:851 [G] 3.03 B5:711 [U] sugar:BB 55.23
Bf:75 [THR] B5:852 [G] 3.64 B5:710 [C] 55.23
Bf:75 [THR] B5:853 [C] 4.91 B5:709 [G] 55.23
Bf:76 [ARG] B5:1843 [G] 2.99 B5:2011 [C] 55.32
Bf:76 [ARG] B5:1844 [U] 2.7 B5:2010 [A] 55.32
Bf:76 [ARG] B5:2006 [C] 4.37 B5:1848 [G] 55.32
Bf:77 [ALA] B5:2006 [C] 3.94 B5:1848 [G] 25.05
Bf:78 [HIS] B5:1855 [G] 2.91 sugar:SC 99.0
Bf:78 [HIS] B5:1856 [A] 3.44 B5:1854 [C] 99.0
Bf:78 [HIS] B5:2005 [C] 4.57 B5:1849 [G] 99.0
Bf:78 [HIS] B5:2006 [C] 3.57 B5:1848 [G] 99.0
Bf:78 [HIS] B5:2007 [C] 3.7 B5:1847 [A] 99.0
Bf:79 [GLY] B5:1856 [A] 3.93 B5:1854 [C] 95.96
Bf:79 [GLY] B5:1857 [U] 3.95 B5:2003 [G] 95.96
Bf:79 [GLY] B5:2005 [C] 3.26 B5:1849 [G] 95.96
Bf:79 [GLY] B5:2006 [C] 3.3 B5:1848 [G] 95.96
Bf:80 [ASN] B5:1856 [A] 3.85 B5:1854 [C] 73.4
Bf:80 [ASN] B5:1857 [U] 2.88 B5:2003 [G] sugar:SC 73.4
Bf:80 [ASN] B5:1858 [G] 4.26 73.4
Bf:80 [ASN] B5:2003 [G] 4.54 B5:1857 [U] 73.4
Bf:80 [ASN] B5:2004 [G] 2.57 B5:1850 [C] base:SC, sugar:SC, sugar:SC 73.4
Bf:80 [ASN] B5:2005 [C] 3.23 B5:1849 [G] 73.4
Bf:81 [SER] B5:1856 [A] 4.71 B5:1854 [C] 78.78
Bf:81 [SER] B5:1857 [U] 2.39 B5:2003 [G] 78.78
Bf:81 [SER] B5:1858 [G] 2.77 sugar:SC 78.78
Bf:83 [MET] B5:1856 [A] 3.88 B5:1854 [C] 55.44
Bf:85 [ARG] B5:1843 [G] 4.9 B5:2011 [C] 71.46
Bf:85 [ARG] B5:2006 [C] 2.94 B5:1848 [G] 71.46
Bf:85 [ARG] B5:2007 [C] 3.0 B5:1847 [A] 71.46
Bf:87 [LYS] B5:853 [C] 4.41 B5:709 [G] 54.04
Bf:87 [LYS] B5:1841 [G] 4.02 B5:2013 [C] 54.04
Bf:87 [LYS] B5:1842 [G] 2.9 B5:2012 [C] 54.04
Bf:89 [ARG] B5:702 [G] 3.22 B5:1233 [C] 39.86
Bf:89 [ARG] B5:703 [C] 3.17 B5:1232 [G] 39.86
Bf:89 [ARG] B5:4682 [A] 4.94 39.86
Bf:90 [SER] B5:440 [U] 3.79 B5:1251 [A] 46.29
Bf:90 [SER] B5:441 [G] 3.23 B5:1250 [C] 46.29
Bf:91 [ASN] B5:439 [G] 2.75 B5:1252 [C] sugar:SC 85.25
Bf:91 [ASN] B5:440 [U] 2.42 B5:1251 [A] sugar:BB 85.25
Bf:91 [ASN] B5:441 [G] 4.89 B5:1250 [C] 85.25
Bf:92 [LEU] B5:440 [U] 3.41 B5:1251 [A] 79.88
Bf:93 [PRO] B5:440 [U] 3.07 B5:1251 [A] 80.22
Bf:93 [PRO] B5:441 [G] 3.42 B5:1250 [C] 80.22
Bf:94 [ALA] B5:439 [G] 3.82 B5:1252 [C] 70.1
Bf:94 [ALA] B5:440 [U] 4.8 B5:1251 [A] 70.1
Bf:94 [ALA] B5:1252 [C] 3.18 B5:439 [G] 70.1
Bf:94 [ALA] B5:1253 [C] 3.25 B5:438 [G] 70.1
Bf:95 [LYS] B5:441 [G] 3.33 B5:1250 [C] 51.33
Bf:95 [LYS] B5:1252 [C] 3.57 B5:439 [G] 51.33
Bf:95 [LYS] B5:4498 [G] 4.43 B5:4687 [C] 51.33
Bf:97 [ILE] B5:1253 [C] 4.19 B5:438 [G] 62.02
Bf:99 [HIS] B5:4498 [G] 3.34 B5:4687 [C] 29.98
Bf:99 [HIS] B5:4499 [U] 3.71 B5:4686 [U] 29.98
Bf:100 [ARG] B5:4499 [U] 2.91 B5:4686 [U] 0.24
Bf:100 [ARG] B5:4500 [U] 2.64 0.24
Bf:102 [ARG] B5:4500 [U] 3.09 63.17
Bf:102 [ARG] B5:4683 [C] 3.43 63.17
Bf:102 [ARG] B5:4684 [G] 3.22 63.17
Bf:102 [ARG] B5:4685 [U] 3.61 63.17
Bf:104 [MET] B5:4683 [C] 3.43 35.08
Bf:106 [TYR] B5:4682 [A] 3.56 30.65
Bf:106 [TYR] B5:4683 [C] 4.7 30.65
Bf:107 [PRO] B5:704 [G] 4.41 B5:1230 [C] 68.13
Bf:109 [ARG] B5:850 [G] 3.27 B5:712 [C] 15.88
Bf:109 [ARG] B5:851 [G] 3.65 B5:711 [U] 15.88

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group51 7O7Y_Bf_B5 Bf: El33, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1SF08 Alanine racemase-C Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_g_1 7O7Y_Bf_B5 0.77 0.91 1.33 0.4 Alanine racemase-C Eukaryotic large subunit ribosomal RNA compare
6AZ3_g_6 7O7Y_Bf_B5 0.57 0.75 1.98 0.21 Alanine racemase-C compare