RNAprotDB

All interfaces > All interologs > Interface groups > group52 > 6AZ3_h_1,2

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6AZ3_h
6AZ3_1,2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
h:3 [CYS] 1:1588 [G] 2.93 2:1837 [C] base:BB 79.9
h:3 [CYS] 2:1823 [A] 4.97 79.9
h:3 [CYS] 2:1824 [A] 3.65 2:1836 [U] 79.9
h:4 [PRO] 1:1588 [G] 4.62 2:1837 [C] 53.7
h:4 [PRO] 2:1822 [C] 4.01 1:1592 [G] 53.7
h:4 [PRO] 2:1823 [A] 4.85 53.7
h:5 [ARG] 1:1588 [G] 3.41 2:1837 [C] base/AA stacks 89.1
h:5 [ARG] 1:1590 [G] 3.11 2:1838 [U] base:SC, base:SC 89.1
h:5 [ARG] 1:1592 [G] 3.44 2:1822 [C] base/AA stacks 89.1
h:5 [ARG] 2:1822 [C] 3.28 1:1592 [G] 89.1
h:5 [ARG] 2:1823 [A] 3.14 base:SC 89.1
h:5 [ARG] 2:1838 [U] 4.13 1:1590 [G] 89.1
h:6 [VAL] 1:1593 [G] 4.1 2:1821 [C] 67.2
h:6 [VAL] 2:1821 [C] 4.79 1:1593 [G] 67.2
h:6 [VAL] 2:1822 [C] 3.32 1:1592 [G] sugar:BB 67.2
h:7 [GLN] 1:1593 [G] 2.94 2:1821 [C] 77.4
h:7 [GLN] 1:1594 [G] 3.57 2:1820 [C] 77.4
h:8 [TYR] 1:1594 [G] 3.85 2:1820 [C] sugar:BB 45.5
h:8 [TYR] 2:1821 [C] 3.16 1:1593 [G] 45.5
h:9 [ARG] 1:1634 [C] 4.64 2:1798 [G] 79.3
h:9 [ARG] 1:1748 [C] 4.98 1:1768 [G] 79.3
h:9 [ARG] 1:1749 [U] 2.83 1:1767 [A] 79.3
h:9 [ARG] 1:1759 [U] 3.44 base/AA stacks 79.3
h:10 [ARG] 1:1634 [C] 3.41 2:1798 [G] 71.9
h:10 [ARG] 1:1635 [G] 3.61 2:1797 [C] 71.9
h:10 [ARG] 1:1748 [C] 3.43 1:1768 [G] 71.9
h:10 [ARG] 1:1759 [U] 3.49 71.9
h:11 [ARG] 1:1595 [G] 4.59 2:1819 [C] 64.7
h:11 [ARG] 1:1631 [G] 2.35 2:1799 [U] base:SC 64.7
h:11 [ARG] 1:1634 [C] 3.22 2:1798 [G] base:SC 64.7
h:11 [ARG] 1:1635 [G] 3.3 2:1797 [C] 64.7
h:11 [ARG] 1:1741 [A] 4.89 64.7
h:11 [ARG] 1:1760 [U] 3.43 64.7
h:11 [ARG] 2:1798 [G] 3.54 1:1634 [C] 64.7
h:11 [ARG] 2:1799 [U] 3.01 1:1631 [G] base:SC 64.7
h:12 [MET] 1:1741 [A] 3.58 9.5
h:12 [MET] 1:1742 [G] 3.68 1:1640 [C] 9.5
h:13 [HIS] 1:1594 [G] 3.62 2:1820 [C] sugar:SC 60.4
h:13 [HIS] 1:1595 [G] 3.23 2:1819 [C] 60.4
h:13 [HIS] 2:1820 [C] 2.63 1:1594 [G] sugar:BB 60.4
h:13 [HIS] 2:1821 [C] 3.74 1:1593 [G] 60.4
h:14 [TYR] 1:1595 [G] 3.47 2:1819 [C] base:SC 78.4
h:14 [TYR] 1:1596 [A] 3.88 78.4
h:14 [TYR] 1:1741 [A] 3.34 base/AA stacks 78.4
h:14 [TYR] 2:1819 [C] 4.22 1:1595 [G] 78.4
h:14 [TYR] 2:1820 [C] 3.29 1:1594 [G] 78.4
h:15 [ALA] 1:878 [A] 3.43 1:949 [U] 80.2
h:15 [ALA] 1:879 [A] 4.87 1:948 [U] 80.2
h:15 [ALA] 2:1820 [C] 4.64 1:1594 [G] 80.2
h:15 [ALA] 2:1821 [C] 4.12 1:1593 [G] 80.2
h:16 [THR] 1:877 [G] 3.72 1:950 [U] 93.4
h:16 [THR] 1:878 [A] 3.9 1:949 [U] 93.4
h:16 [THR] 1:1741 [A] 4.07 93.4
h:16 [THR] 1:1742 [G] 3.05 1:1640 [C] 93.4
h:17 [ARG] 1:877 [G] 4.23 1:950 [U] 70.8
h:17 [ARG] 1:878 [A] 4.28 1:949 [U] 70.8
h:17 [ARG] 1:1742 [G] 3.87 1:1640 [C] 70.8
h:17 [ARG] 1:1743 [A] 3.19 70.8
h:18 [GLY] 1:1743 [A] 4.48 91.5
h:23 [MET] 2:1822 [C] 4.46 1:1592 [G] 36.0
h:23 [MET] 2:1823 [A] 4.94 36.0
h:24 [VAL] 1:1749 [U] 4.89 1:1767 [A] 74.9
h:26 [THR] 1:1749 [U] 3.63 1:1767 [A] 97.5
h:26 [THR] 1:1750 [G] 2.89 1:1762 [C] 97.5
h:27 [PRO] 1:1749 [U] 3.48 1:1767 [A] 95.2
h:27 [PRO] 1:1750 [G] 4.28 1:1762 [C] 95.2
h:28 [GLY] 1:1749 [U] 4.24 1:1767 [A] 97.4
h:28 [GLY] 1:1750 [G] 3.22 1:1762 [C] 97.4
h:29 [ASN] 1:1750 [G] 4.65 1:1762 [C] 74.2
h:30 [LYS] 1:1750 [G] 3.89 1:1762 [C] 60.8
h:32 [VAL] 1:1749 [U] 3.27 1:1767 [A] 74.8
h:33 [MET] 1:1759 [U] 4.7 46.7
h:33 [MET] 2:1821 [C] 3.98 1:1593 [G] 46.7
h:33 [MET] 2:1822 [C] 4.44 1:1592 [G] 46.7
h:34 [GLN] 1:1748 [C] 3.02 1:1768 [G] 59.6
h:34 [GLN] 1:1749 [U] 3.01 1:1767 [A] 59.6
h:35 [LYS] 1:1745 [A] 4.02 55.9
h:38 [LYS] 1:1743 [A] 2.85 98.1
h:38 [LYS] 1:1744 [G] 3.19 98.1
h:48 [VAL] 2:2756 [U] 3.24 base:BB 36.2
h:49 [LEU] 2:2756 [U] 3.96 7.2
h:61 [ARG] 1:1743 [A] 4.94 84.2
h:61 [ARG] 1:1744 [G] 2.92 84.2
h:61 [ARG] 1:1745 [A] 2.63 84.2
h:62 [HIS] 1:1743 [A] 4.91 72.1
h:62 [HIS] 1:1744 [G] 3.06 72.1
h:62 [HIS] 1:1745 [A] 3.35 72.1
h:63 [ILE] 1:1745 [A] 4.37 16.4
h:63 [ILE] 1:1746 [A] 3.6 16.4
h:66 [ARG] 1:1772 [U] 4.4 2:1794 [G] 59.2
h:66 [ARG] 1:1773 [U] 3.41 2:1793 [A] 59.2
h:67 [LEU] 1:1772 [U] 3.3 2:1794 [G] 59.1
h:67 [LEU] 1:1773 [U] 4.51 2:1793 [A] 59.1
h:79 [TYR] 2:2758 [A] 4.3 93.8
h:91 [ARG] 2:2757 [G] 2.94 86.9
h:91 [ARG] 2:2758 [A] 3.17 86.9
h:94 [ARG] 2:2755 [C] 4.43 92.3
h:94 [ARG] 2:2756 [U] 3.04 92.3
h:94 [ARG] 2:2757 [G] 3.13 92.3
h:95 [ALA] 2:2757 [G] 3.4 92.7
h:98 [VAL] 2:2757 [G] 3.48 55.5
h:99 [GLU] 2:2757 [G] 2.64 base:SC 88.7
h:99 [GLU] 2:2758 [A] 3.46 88.7
h:102 [ARG] 2:2757 [G] 2.65 base:SC 86.1
h:102 [ARG] 2:2758 [A] 4.08 86.1
h:105 [LYS] 2:2751 [U] 3.32 73.6
h:105 [LYS] 2:2752 [A] 2.79 73.6
h:106 [GLN] 2:2750 [G] 4.52 55.0
h:109 [LYS] 2:2750 [G] 3.93 46.4
h:116 [LEU] 2:2601 [U] 3.29 56.6

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group52 6AZ3_h_1,2 h: 60s ribosomal protein l34, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3Q8IHK2 RPL34 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_h_1,2 7O7Y_Bg_B5 0.73 0.92 1.58 0.41 RPL34 Eukaryotic large subunit ribosomal RNA compare