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All interfaces > All interologs > Interface groups > group52 > 6AZ3_h_3

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_h
6AZ3_3
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
h:3 [CYS] 3:42 [U] 3.22 3:181 [A] sugar:BB 79.95
h:3 [CYS] 3:43 [C] 3.29 3:180 [G] 79.95
h:4 [PRO] 3:42 [U] 4.05 3:181 [A] 53.78
h:4 [PRO] 3:43 [C] 4.44 3:180 [G] 53.78
h:17 [ARG] 3:30 [A] 3.46 3:201 [A] 70.83
h:17 [ARG] 3:31 [C] 2.84 3:200 [A] sugar:SC 70.83
h:20 [ARG] 3:184 [U] 3.82 45.0
h:20 [ARG] 3:185 [C] 2.46 3:38 [A] 45.0
h:20 [ARG] 3:186 [U] 4.05 3:37 [A] 45.0
h:22 [LYS] 3:40 [C] 2.8 3:183 [U] base:BB, sugar:BB 55.0
h:23 [MET] 3:40 [C] 3.1 3:183 [U] 36.05
h:23 [MET] 3:41 [C] 3.38 3:182 [G] 36.05
h:24 [VAL] 3:40 [C] 4.24 3:183 [U] 74.9
h:24 [VAL] 3:41 [C] 4.5 3:182 [G] 74.9
h:24 [VAL] 3:69 [A] 4.45 3:146 [A] 74.9
h:24 [VAL] 3:70 [A] 4.98 3:145 [A] 74.9
h:25 [ARG] 3:41 [C] 4.3 3:182 [G] 81.93
h:25 [ARG] 3:42 [U] 2.39 3:181 [A] 81.93
h:25 [ARG] 3:67 [A] 3.51 3:149 [U] 81.93
h:25 [ARG] 3:68 [U] 3.32 3:147 [A] 81.93
h:25 [ARG] 3:69 [A] 3.29 3:146 [A] 81.93
h:26 [THR] 3:67 [A] 2.48 3:149 [U] sugar:BB 97.58
h:26 [THR] 3:68 [U] 3.68 3:147 [A] 97.58
h:26 [THR] 3:69 [A] 4.01 3:146 [A] 97.58
h:27 [PRO] 3:67 [A] 3.04 3:149 [U] base:BB 95.24
h:27 [PRO] 3:68 [U] 3.62 3:147 [A] 95.24
h:27 [PRO] 3:69 [A] 3.36 3:146 [A] 95.24
h:27 [PRO] 3:146 [A] 4.37 3:69 [A] 95.24
h:27 [PRO] 3:147 [A] 4.69 3:68 [U] 95.24
h:27 [PRO] 3:149 [U] 4.42 3:67 [A] 95.24
h:27 [PRO] 3:150 [G] 3.86 3:170 [U] 95.24
h:28 [GLY] 3:67 [A] 4.63 3:149 [U] 97.41
h:28 [GLY] 3:150 [G] 3.85 3:170 [U] 97.41
h:29 [ASN] 3:65 [C] 3.71 3:49 [G] 74.23
h:29 [ASN] 3:66 [C] 2.4 3:48 [G] 74.23
h:29 [ASN] 3:67 [A] 3.42 3:149 [U] sugar:BB 74.23
h:29 [ASN] 3:150 [G] 4.78 3:170 [U] 74.23
h:31 [LEU] 3:41 [C] 3.39 3:182 [G] 71.36
h:31 [LEU] 3:42 [U] 4.15 3:181 [A] 71.36
h:34 [GLN] 3:69 [A] 2.57 3:146 [A] sugar:SC 59.63
h:34 [GLN] 3:70 [A] 3.68 3:145 [A] 59.63
h:36 [ARG] 3:39 [U] 3.1 base:SC 21.35
h:36 [ARG] 3:40 [C] 3.61 3:183 [U] 21.35
h:36 [ARG] 3:185 [C] 3.51 3:38 [A] 21.35
h:38 [LYS] 3:29 [A] 4.66 3:202 [A] 98.1
h:38 [LYS] 3:30 [A] 3.26 3:201 [A] 98.1
h:39 [ARG] 3:29 [A] 4.13 3:202 [A] 45.25
h:39 [ARG] 3:137 [A] 3.68 3:97 [U] 45.25
h:39 [ARG] 3:138 [A] 3.54 3:96 [U] 45.25
h:39 [ARG] 3:186 [U] 3.45 3:37 [A] 45.25
h:39 [ARG] 3:187 [G] 3.46 3:36 [C] 45.25
h:40 [SER] 3:28 [U] 3.28 3:203 [A] 44.34
h:40 [SER] 3:29 [A] 3.81 3:202 [A] 44.34
h:41 [GLN] 3:28 [U] 3.77 3:203 [A] 50.34
h:41 [GLN] 3:29 [A] 3.13 3:202 [A] 50.34
h:41 [GLN] 3:30 [A] 4.59 3:201 [A] 50.34
h:41 [GLN] 3:31 [C] 3.22 3:200 [A] 50.34
h:41 [GLN] 3:188 [C] 4.69 50.34
h:41 [GLN] 3:189 [G] 3.41 50.34
h:42 [GLY] 3:27 [G] 4.26 3:204 [C] 45.13
h:42 [GLY] 3:28 [U] 3.15 3:203 [A] 45.13
h:43 [ILE] 3:27 [G] 3.6 3:204 [C] 64.86
h:43 [ILE] 3:28 [U] 4.9 3:203 [A] 64.86
h:43 [ILE] 3:205 [C] 4.9 3:26 [G] 64.86
h:44 [HIS] 3:27 [G] 3.02 3:204 [C] sugar:BB 32.44
h:44 [HIS] 3:28 [U] 2.86 3:203 [A] 32.44
h:45 [THR] 3:27 [G] 3.59 3:204 [C] 68.1
h:46 [PRO] 3:26 [G] 3.22 3:205 [C] 40.75
h:46 [PRO] 3:27 [G] 3.51 3:204 [C] 40.75
h:47 [TRP] 3:26 [G] 4.46 3:205 [C] 21.37
h:47 [TRP] 3:27 [G] 2.86 3:204 [C] 21.37
h:47 [TRP] 3:190 [C] 2.35 base:BB base/AA stacks 21.37
h:47 [TRP] 3:191 [A] 4.91 21.37
h:48 [VAL] 3:27 [G] 4.88 3:204 [C] 36.22
h:48 [VAL] 3:190 [C] 4.25 36.22
h:50 [GLY] 3:190 [C] 4.23 21.87
h:51 [HIS] 3:27 [G] 3.62 3:204 [C] 38.74
h:51 [HIS] 3:28 [U] 3.14 3:203 [A] 38.74
h:51 [HIS] 3:190 [C] 3.06 38.74
h:53 [ARG] 3:100 [G] 4.73 3:134 [C] 42.48
h:53 [ARG] 3:136 [C] 3.44 3:98 [G] 42.48
h:53 [ARG] 3:137 [A] 4.05 3:97 [U] 42.48
h:55 [GLY] 3:10 [OMU] 3.37 3:5 [G] 2.41
h:55 [GLY] 3:135 [U] 3.61 3:99 [G] 2.41
h:56 [GLY] 3:10 [OMU] 4.18 3:5 [G] 85.94
h:56 [GLY] 3:11 [G] 3.55 3:4 [U] 85.94
h:56 [GLY] 3:135 [U] 2.8 3:99 [G] sugar:BB 85.94
h:56 [GLY] 3:136 [C] 4.06 3:98 [G] 85.94
h:57 [THR] 3:135 [U] 4.69 3:99 [G] 75.06
h:57 [THR] 3:136 [C] 3.31 3:98 [G] 75.06
h:58 [LYS] 3:136 [C] 3.31 3:98 [G] 41.15
h:58 [LYS] 3:137 [A] 3.56 3:97 [U] 41.15
h:59 [ALA] 3:136 [C] 4.21 3:98 [G] 60.91
h:59 [ALA] 3:137 [A] 2.83 3:97 [U] 60.91
h:60 [LEU] 3:28 [U] 4.65 3:203 [A] 50.2
h:61 [ARG] 3:28 [U] 3.77 3:203 [A] sugar:BB 84.24
h:62 [HIS] 3:28 [U] 4.46 3:203 [A] 72.19
h:62 [HIS] 3:29 [A] 3.34 3:202 [A] sugar:SC 72.19
h:62 [HIS] 3:203 [A] 4.36 3:28 [U] 72.19
h:62 [HIS] 3:204 [C] 3.68 3:27 [G] sugar:BB 72.19
h:65 [ALA] 3:204 [C] 4.71 3:27 [G] 18.54
h:65 [ALA] 3:205 [C] 3.25 3:26 [G] 18.54
h:66 [ARG] 3:204 [C] 3.75 3:27 [G] 59.27
h:66 [ARG] 3:205 [C] 3.75 3:26 [G] 59.27
h:69 [SER] 3:13 [G] 2.42 base:SC 58.95
h:69 [SER] 3:206 [U] 4.79 3:25 [A] 58.95
h:70 [ARG] 3:3 [G] 4.93 3:12 [C] 70.42
h:70 [ARG] 3:13 [G] 4.14 70.42
h:70 [ARG] 3:17 [C] 3.49 70.42
h:70 [ARG] 3:206 [U] 3.78 3:25 [A] 70.42
h:70 [ARG] 3:207 [G] 3.52 3:24 [C] 70.42
h:71 [HIS] 3:3 [G] 4.08 3:12 [C] 53.18
h:71 [HIS] 3:11 [G] 4.81 3:4 [U] 53.18
h:71 [HIS] 3:12 [C] 3.15 3:3 [G] base/AA stacks 53.18
h:71 [HIS] 3:13 [G] 3.55 base/AA stacks 53.18
h:71 [HIS] 3:17 [C] 2.71 base:SC 53.18
h:73 [LYS] 3:205 [C] 3.38 3:26 [G] 85.53
h:73 [LYS] 3:206 [U] 2.95 3:25 [A] 85.53
h:74 [SER] 3:11 [G] 4.34 3:4 [U] 79.47
h:74 [SER] 3:206 [U] 3.25 3:25 [A] 79.47
h:74 [SER] 3:207 [G] 3.77 3:24 [C] 79.47
h:75 [VAL] 3:10 [OMU] 3.55 3:5 [G] 95.67
h:75 [VAL] 3:11 [G] 3.13 3:4 [U] 95.67
h:75 [VAL] 3:207 [G] 4.82 3:24 [C] 95.67
h:76 [SER] 3:3 [G] 4.51 3:12 [C] 77.66
h:76 [SER] 3:4 [U] 3.87 3:11 [G] 77.66
h:76 [SER] 3:5 [G] 3.99 3:10 [OMU] 77.66
h:76 [SER] 3:10 [OMU] 3.35 3:5 [G] 77.66
h:76 [SER] 3:11 [G] 2.54 3:4 [U] base:SC, base:SC 77.66
h:76 [SER] 3:12 [C] 3.6 3:3 [G] 77.66
h:77 [ARG] 3:8 [A] 4.66 99.0
h:77 [ARG] 3:9 [A] 2.36 3:6 [G] 99.0
h:77 [ARG] 3:10 [OMU] 3.0 3:5 [G] 99.0
h:77 [ARG] 3:207 [G] 4.86 3:24 [C] 99.0
h:77 [ARG] 3:208 [G] 4.58 3:23 [C] 99.0
h:78 [ALA] 3:207 [G] 4.28 3:24 [C] 75.13
h:78 [ALA] 3:208 [G] 3.35 3:23 [C] 75.13
h:79 [TYR] 3:207 [G] 3.18 3:24 [C] 93.82
h:79 [TYR] 3:208 [G] 3.4 3:23 [C] 93.82
h:80 [GLY] 3:206 [U] 2.65 3:25 [A] sugar:BB 97.51
h:80 [GLY] 3:207 [G] 3.31 3:24 [C] 97.51
h:81 [GLY] 3:206 [U] 3.33 3:25 [A] 96.01
h:82 [VAL] 3:26 [G] 3.63 3:205 [C] 65.85
h:82 [VAL] 3:206 [U] 3.32 3:25 [A] 65.85
h:82 [VAL] 3:207 [G] 3.79 3:24 [C] 65.85
h:85 [HIS] 3:9 [A] 3.66 3:6 [G] 54.43
h:85 [HIS] 3:10 [OMU] 4.49 3:5 [G] 54.43
h:85 [HIS] 3:101 [C] 2.69 3:133 [G] 54.43
h:85 [HIS] 3:102 [C] 3.37 3:132 [G] 54.43

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group52 6AZ3_h_3 h: 60s ribosomal protein l34, putative, Leishmania donovani (natural) 3: rRNA gamma, Leishmania donovani (natural) A0A3Q8IHK2 RPL34 ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_h_3 7O7Y_Bg_B5 0.67 0.89 1.87 0.36 RPL34 compare