Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
7O7Y_Bg
|
7O7Y_B5
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
Bg:2 [VAL] | B5:2238 [A] | 3.34 | B5:2663 [C] | base:BB | 28.67 | |
Bg:2 [VAL] | B5:2456 [C] | 3.2 | B5:2569 [G] | 28.67 | ||
Bg:2 [VAL] | B5:2457 [C] | 3.48 | B5:2567 [G] | 28.67 | ||
Bg:2 [VAL] | B5:2649 [A] | 4.78 | 28.67 | |||
Bg:2 [VAL] | B5:2650 [A] | 3.45 | B5:2662 [U] | 28.67 | ||
Bg:3 [GLN] | B5:2648 [C] | 4.8 | B5:2242 [G] | 29.86 | ||
Bg:4 [ARG] | B5:2238 [A] | 3.37 | B5:2663 [C] | base/AA stacks | 78.44 | |
Bg:4 [ARG] | B5:2240 [G] | 2.8 | B5:2664 [U] | base:SC, base:SC | 78.44 | |
Bg:4 [ARG] | B5:2242 [G] | 3.34 | B5:2648 [C] | base/AA stacks | 78.44 | |
Bg:4 [ARG] | B5:2648 [C] | 3.34 | B5:2242 [G] | 78.44 | ||
Bg:4 [ARG] | B5:2649 [A] | 3.32 | base:SC | 78.44 | ||
Bg:4 [ARG] | B5:2664 [U] | 3.63 | B5:2240 [G] | base:SC | 78.44 | |
Bg:5 [LEU] | B5:2243 [G] | 3.29 | B5:2647 [OMC] | base:BB | 32.75 | |
Bg:5 [LEU] | B5:2647 [OMC] | 4.28 | B5:2243 [G] | 32.75 | ||
Bg:5 [LEU] | B5:2648 [C] | 2.92 | B5:2242 [G] | sugar:BB | 32.75 | |
Bg:6 [THR] | B5:2243 [G] | 3.55 | B5:2647 [OMC] | 68.06 | ||
Bg:6 [THR] | B5:2244 [A2M] | 3.4 | B5:2646 [U] | 68.06 | ||
Bg:6 [THR] | B5:2647 [OMC] | 4.5 | B5:2243 [G] | 68.06 | ||
Bg:7 [TYR] | B5:2244 [A2M] | 3.36 | B5:2646 [U] | 10.09 | ||
Bg:7 [TYR] | B5:2647 [OMC] | 3.33 | B5:2243 [G] | 10.09 | ||
Bg:8 [ARG] | B5:2363 [C] | 4.25 | B5:2378 [G] | 70.95 | ||
Bg:8 [ARG] | B5:2364 [G] | 2.6 | B5:2377 [C] | 70.95 | ||
Bg:8 [ARG] | B5:2373 [U] | 3.51 | sugar:SC | base/AA stacks | 70.95 | |
Bg:9 [ARG] | B5:2244 [A2M] | 4.56 | B5:2646 [U] | 47.95 | ||
Bg:9 [ARG] | B5:2245 [G] | 4.4 | B5:2645 [C] | 47.95 | ||
Bg:9 [ARG] | B5:2284 [C] | 3.73 | B5:2624 [G] | 47.95 | ||
Bg:9 [ARG] | B5:2285 [G] | 4.26 | B5:2623 [C] | 47.95 | ||
Bg:9 [ARG] | B5:2363 [C] | 3.99 | B5:2378 [G] | 47.95 | ||
Bg:9 [ARG] | B5:2373 [U] | 3.0 | base:SC | 47.95 | ||
Bg:10 [ARG] | B5:2245 [G] | 2.56 | B5:2645 [C] | sugar:BB | 60.64 | |
Bg:10 [ARG] | B5:2246 [A] | 3.07 | 60.64 | |||
Bg:10 [ARG] | B5:2284 [C] | 4.88 | B5:2624 [G] | 60.64 | ||
Bg:10 [ARG] | B5:2625 [U] | 2.93 | B5:2281 [A] | 60.64 | ||
Bg:10 [ARG] | B5:2626 [A] | 3.22 | B5:2252 [U] | 60.64 | ||
Bg:11 [LEU] | B5:2245 [G] | 4.42 | B5:2645 [C] | 45.51 | ||
Bg:11 [LEU] | B5:2356 [A] | 3.25 | 45.51 | |||
Bg:11 [LEU] | B5:2357 [G] | 4.5 | B5:2289 [C] | 45.51 | ||
Bg:12 [SER] | B5:2245 [G] | 3.13 | B5:2645 [C] | base:SC | 52.14 | |
Bg:12 [SER] | B5:2246 [A] | 3.57 | sugar:SC | 52.14 | ||
Bg:12 [SER] | B5:2646 [U] | 2.62 | B5:2244 [A2M] | sugar:BB | 52.14 | |
Bg:12 [SER] | B5:2647 [OMC] | 3.61 | B5:2243 [G] | 52.14 | ||
Bg:13 [TYR] | B5:1572 [G] | 4.86 | B5:1497 [U] | 58.68 | ||
Bg:13 [TYR] | B5:2245 [G] | 3.53 | B5:2645 [C] | 58.68 | ||
Bg:13 [TYR] | B5:2246 [A] | 3.96 | base:SC | 58.68 | ||
Bg:13 [TYR] | B5:2356 [A] | 3.3 | base/AA stacks | 58.68 | ||
Bg:13 [TYR] | B5:2645 [C] | 2.7 | B5:2245 [G] | base:SC | 58.68 | |
Bg:13 [TYR] | B5:2646 [U] | 3.43 | B5:2244 [A2M] | 58.68 | ||
Bg:14 [ASN] | B5:1498 [G] | 4.83 | B5:1571 [U] | 71.14 | ||
Bg:14 [ASN] | B5:1499 [G] | 3.25 | B5:1570 [C] | 71.14 | ||
Bg:14 [ASN] | B5:1500 [G] | 3.16 | B5:1569 [C] | 71.14 | ||
Bg:14 [ASN] | B5:2573 [U] | 4.89 | B5:2452 [G] | 71.14 | ||
Bg:14 [ASN] | B5:2646 [U] | 4.39 | B5:2244 [A2M] | 71.14 | ||
Bg:14 [ASN] | B5:2647 [OMC] | 4.54 | B5:2243 [G] | 71.14 | ||
Bg:15 [THR] | B5:1498 [G] | 3.26 | B5:1571 [U] | 93.4 | ||
Bg:15 [THR] | B5:1499 [G] | 3.61 | B5:1570 [C] | 93.4 | ||
Bg:15 [THR] | B5:2356 [A] | 3.55 | 93.4 | |||
Bg:15 [THR] | B5:2357 [G] | 2.58 | B5:2289 [C] | 93.4 | ||
Bg:16 [ALA] | B5:1498 [G] | 4.93 | B5:1571 [U] | 54.8 | ||
Bg:16 [ALA] | B5:1499 [G] | 4.02 | B5:1570 [C] | 54.8 | ||
Bg:16 [ALA] | B5:2357 [G] | 4.45 | B5:2289 [C] | 54.8 | ||
Bg:16 [ALA] | B5:2358 [G] | 3.3 | B5:2288 [C] | 54.8 | ||
Bg:17 [SER] | B5:2356 [A] | 4.75 | 88.29 | |||
Bg:17 [SER] | B5:2357 [G] | 2.5 | B5:2289 [C] | 88.29 | ||
Bg:17 [SER] | B5:2358 [G] | 3.61 | B5:2288 [C] | 88.29 | ||
Bg:19 [LYS] | B5:2573 [U] | 3.88 | B5:2452 [G] | 59.47 | ||
Bg:20 [THR] | B5:2572 [C] | 3.8 | B5:2453 [G] | sugar:BB | 49.69 | |
Bg:20 [THR] | B5:2573 [U] | 4.46 | B5:2452 [G] | 49.69 | ||
Bg:21 [ARG] | B5:2483 [G] | 4.77 | B5:2537 [G] | 57.06 | ||
Bg:21 [ARG] | B5:2484 [A] | 2.79 | B5:2536 [G] | 57.06 | ||
Bg:21 [ARG] | B5:2530 [U] | 3.44 | 57.06 | |||
Bg:21 [ARG] | B5:2531 [G] | 4.36 | B5:2489 [C] | 57.06 | ||
Bg:22 [LEU] | B5:2454 [A] | 4.64 | B5:2571 [U] | 0.0 | ||
Bg:22 [LEU] | B5:2455 [G] | 3.24 | B5:2570 [C] | 0.0 | ||
Bg:23 [SER] | B5:2483 [G] | 3.85 | B5:2537 [G] | 74.25 | ||
Bg:23 [SER] | B5:2484 [A] | 4.91 | B5:2536 [G] | 74.25 | ||
Bg:24 [ARG] | B5:2455 [G] | 3.51 | B5:2570 [C] | 82.39 | ||
Bg:24 [ARG] | B5:2456 [C] | 2.62 | B5:2569 [G] | 82.39 | ||
Bg:24 [ARG] | B5:2481 [G] | 3.24 | B5:2540 [A] | 82.39 | ||
Bg:24 [ARG] | B5:2482 [U] | 3.5 | B5:2538 [A] | 82.39 | ||
Bg:24 [ARG] | B5:2483 [G] | 3.41 | B5:2537 [G] | 82.39 | ||
Bg:25 [THR] | B5:2364 [G] | 3.53 | B5:2377 [C] | 85.85 | ||
Bg:25 [THR] | B5:2365 [G] | 2.87 | B5:2376 [C] | 85.85 | ||
Bg:25 [THR] | B5:2481 [G] | 2.74 | B5:2540 [A] | sugar:BB | 85.85 | |
Bg:25 [THR] | B5:2482 [U] | 3.83 | B5:2538 [A] | 85.85 | ||
Bg:25 [THR] | B5:2483 [G] | 4.47 | B5:2537 [G] | 85.85 | ||
Bg:26 [PRO] | B5:2364 [G] | 3.67 | B5:2377 [C] | 87.28 | ||
Bg:26 [PRO] | B5:2365 [G] | 4.71 | B5:2376 [C] | 87.28 | ||
Bg:26 [PRO] | B5:2481 [G] | 3.4 | B5:2540 [A] | 87.28 | ||
Bg:26 [PRO] | B5:2482 [U] | 3.29 | B5:2538 [A] | 87.28 | ||
Bg:26 [PRO] | B5:2483 [G] | 3.71 | B5:2537 [G] | 87.28 | ||
Bg:26 [PRO] | B5:2537 [G] | 4.1 | B5:2483 [G] | 87.28 | ||
Bg:26 [PRO] | B5:2538 [A] | 3.9 | B5:2482 [U] | 87.28 | ||
Bg:26 [PRO] | B5:2540 [A] | 3.76 | B5:2481 [G] | 87.28 | ||
Bg:26 [PRO] | B5:2541 [G] | 4.11 | B5:2561 [U] | 87.28 | ||
Bg:27 [GLY] | B5:2364 [G] | 4.25 | B5:2377 [C] | 81.75 | ||
Bg:27 [GLY] | B5:2365 [G] | 3.36 | B5:2376 [C] | 81.75 | ||
Bg:27 [GLY] | B5:2541 [G] | 3.66 | B5:2561 [U] | 81.75 | ||
Bg:28 [ASN] | B5:2365 [G] | 4.97 | B5:2376 [C] | 62.59 | ||
Bg:28 [ASN] | B5:2480 [U] | 4.81 | B5:2462 [G] | 62.59 | ||
Bg:28 [ASN] | B5:2481 [G] | 2.88 | B5:2540 [A] | 62.59 | ||
Bg:28 [ASN] | B5:2541 [G] | 3.04 | B5:2561 [U] | base:SC, base:SC | 62.59 | |
Bg:28 [ASN] | B5:2542 [C] | 4.02 | B5:2560 [G] | 62.59 | ||
Bg:29 [ARG] | B5:2364 [G] | 4.98 | B5:2377 [C] | 67.48 | ||
Bg:29 [ARG] | B5:2365 [G] | 2.8 | B5:2376 [C] | 67.48 | ||
Bg:30 [ILE] | B5:2455 [G] | 4.2 | B5:2570 [C] | 55.54 | ||
Bg:30 [ILE] | B5:2456 [C] | 4.47 | B5:2569 [G] | 55.54 | ||
Bg:31 [VAL] | B5:2364 [G] | 3.27 | B5:2377 [C] | 63.44 | ||
Bg:32 [TYR] | B5:2364 [G] | 4.94 | B5:2377 [C] | 13.97 | ||
Bg:32 [TYR] | B5:2647 [OMC] | 3.6 | B5:2243 [G] | 13.97 | ||
Bg:32 [TYR] | B5:2648 [C] | 3.39 | B5:2242 [G] | 13.97 | ||
Bg:33 [LEU] | B5:2363 [C] | 4.05 | B5:2378 [G] | 73.69 | ||
Bg:33 [LEU] | B5:2364 [G] | 4.27 | B5:2377 [C] | 73.69 | ||
Bg:33 [LEU] | B5:2483 [G] | 3.79 | B5:2537 [G] | 73.69 | ||
Bg:33 [LEU] | B5:2484 [A] | 3.85 | B5:2536 [G] | 73.69 | ||
Bg:34 [TYR] | B5:2373 [U] | 3.33 | 46.5 | |||
Bg:36 [LYS] | B5:2361 [G] | 3.07 | 64.37 | |||
Bg:36 [LYS] | B5:2362 [U] | 2.73 | B5:2379 [A] | 64.37 | ||
Bg:37 [LYS] | B5:2357 [G] | 4.67 | B5:2289 [C] | 81.68 | ||
Bg:37 [LYS] | B5:2358 [G] | 2.41 | B5:2288 [C] | 81.68 | ||
Bg:37 [LYS] | B5:2359 [G] | 2.64 | B5:2287 [U] | 81.68 | ||
Bg:37 [LYS] | B5:2442 [G] | 4.91 | B5:2589 [A] | 81.68 | ||
Bg:37 [LYS] | B5:2443 [A] | 3.37 | B5:2588 [A] | 81.68 | ||
Bg:38 [VAL] | B5:2530 [U] | 4.44 | 47.43 | |||
Bg:38 [VAL] | B5:2574 [C] | 3.99 | B5:2451 [G] | 47.43 | ||
Bg:38 [VAL] | B5:2575 [G] | 3.98 | B5:2450 [C] | 47.43 | ||
Bg:40 [LYS] | B5:2441 [A] | 4.14 | B5:2590 [U] | 49.62 | ||
Bg:40 [LYS] | B5:2442 [G] | 2.75 | B5:2589 [A] | 49.62 | ||
Bg:40 [LYS] | B5:2443 [A] | 4.98 | B5:2588 [A] | 49.62 | ||
Bg:40 [LYS] | B5:2444 [A] | 3.25 | B5:2587 [A] | 49.62 | ||
Bg:41 [ALA] | B5:2440 [G] | 4.91 | B5:2591 [C] | 41.45 | ||
Bg:41 [ALA] | B5:2441 [A] | 4.26 | B5:2590 [U] | 41.45 | ||
Bg:42 [PRO] | B5:2440 [G] | 3.15 | B5:2591 [C] | 64.1 | ||
Bg:42 [PRO] | B5:2441 [A] | 4.67 | B5:2590 [U] | 64.1 | ||
Bg:43 [LYS] | B5:2439 [G] | 4.23 | B5:2592 [C] | 35.6 | ||
Bg:43 [LYS] | B5:2440 [G] | 3.28 | B5:2591 [C] | 35.6 | ||
Bg:43 [LYS] | B5:2441 [A] | 3.72 | B5:2590 [U] | 35.6 | ||
Bg:44 [SER] | B5:2439 [G] | 4.53 | B5:2592 [C] | 63.28 | ||
Bg:44 [SER] | B5:2440 [G] | 4.61 | B5:2591 [C] | 63.28 | ||
Bg:45 [ALA] | B5:2439 [G] | 3.22 | B5:2592 [C] | 46.09 | ||
Bg:46 [CYS] | B5:3849 [G] | 4.73 | 90.04 | |||
Bg:47 [GLY] | B5:3849 [G] | 4.84 | 65.08 | |||
Bg:48 [VAL] | B5:3849 [G] | 3.52 | 18.36 | |||
Bg:50 [PRO] | B5:2495 [G] | 3.56 | 59.03 | |||
Bg:51 [GLY] | B5:2495 [G] | 3.45 | 0.99 | |||
Bg:51 [GLY] | B5:2496 [C] | 3.46 | B5:2524 [G] | 0.99 | ||
Bg:52 [ARG] | B5:2440 [G] | 4.39 | B5:2591 [C] | 33.32 | ||
Bg:52 [ARG] | B5:2441 [A] | 3.08 | B5:2590 [U] | 33.32 | ||
Bg:52 [ARG] | B5:2444 [A] | 4.63 | B5:2587 [A] | 33.32 | ||
Bg:52 [ARG] | B5:2496 [C] | 4.3 | B5:2524 [G] | 33.32 | ||
Bg:54 [ARG] | B5:2425 [A] | 3.93 | B5:2422 [G] | 43.72 | ||
Bg:54 [ARG] | B5:2426 [C] | 3.09 | B5:2421 [G] | 43.72 | ||
Bg:54 [ARG] | B5:2496 [C] | 3.26 | B5:2524 [G] | 43.72 | ||
Bg:54 [ARG] | B5:2525 [G] | 4.5 | B5:2494 [C] | 43.72 | ||
Bg:54 [ARG] | B5:2526 [C] | 3.26 | B5:2493 [G] | 43.72 | ||
Bg:55 [GLY] | B5:2426 [C] | 3.99 | B5:2421 [G] | 96.36 | ||
Bg:55 [GLY] | B5:2427 [G] | 3.25 | B5:2420 [C] | 96.36 | ||
Bg:55 [GLY] | B5:2526 [C] | 2.92 | B5:2493 [G] | sugar:BB | 96.36 | |
Bg:55 [GLY] | B5:2527 [C] | 3.88 | B5:2492 [G] | 96.36 | ||
Bg:56 [VAL] | B5:2526 [C] | 4.65 | B5:2493 [G] | 80.28 | ||
Bg:56 [VAL] | B5:2527 [C] | 3.58 | B5:2492 [G] | 80.28 | ||
Bg:56 [VAL] | B5:2528 [C] | 5.0 | B5:2491 [G] | 80.28 | ||
Bg:57 [ARG] | B5:2527 [C] | 4.44 | B5:2492 [G] | 29.98 | ||
Bg:57 [ARG] | B5:2528 [C] | 2.97 | B5:2491 [G] | 29.98 | ||
Bg:57 [ARG] | B5:2529 [G] | 4.94 | B5:2490 [A] | 29.98 | ||
Bg:58 [ALA] | B5:2527 [C] | 3.78 | B5:2492 [G] | 46.77 | ||
Bg:58 [ALA] | B5:2528 [C] | 3.01 | B5:2491 [G] | 46.77 | ||
Bg:59 [VAL] | B5:2441 [A] | 4.34 | B5:2590 [U] | 5.82 | ||
Bg:59 [VAL] | B5:2528 [C] | 4.85 | B5:2491 [G] | 5.82 | ||
Bg:60 [ARG] | B5:2358 [G] | 4.52 | B5:2288 [C] | 70.46 | ||
Bg:60 [ARG] | B5:2359 [G] | 2.7 | B5:2287 [U] | 70.46 | ||
Bg:60 [ARG] | B5:2360 [A] | 4.74 | 70.46 | |||
Bg:60 [ARG] | B5:2441 [A] | 4.57 | B5:2590 [U] | 70.46 | ||
Bg:60 [ARG] | B5:2442 [G] | 3.3 | B5:2589 [A] | 70.46 | ||
Bg:60 [ARG] | B5:2443 [A] | 4.07 | B5:2588 [A] | 70.46 | ||
Bg:61 [PRO] | B5:2440 [G] | 4.48 | B5:2591 [C] | 63.29 | ||
Bg:61 [PRO] | B5:2441 [A] | 3.22 | B5:2590 [U] | 63.29 | ||
Bg:61 [PRO] | B5:2442 [G] | 3.48 | B5:2589 [A] | 63.29 | ||
Bg:61 [PRO] | B5:2591 [C] | 2.54 | B5:2440 [G] | sugar:BB | 63.29 | |
Bg:61 [PRO] | B5:2592 [C] | 4.53 | B5:2439 [G] | 63.29 | ||
Bg:62 [LYS] | B5:2359 [G] | 2.79 | B5:2287 [U] | sugar:SC | 20.6 | |
Bg:62 [LYS] | B5:2360 [A] | 3.2 | 20.6 | |||
Bg:62 [LYS] | B5:2590 [U] | 3.8 | B5:2441 [A] | 20.6 | ||
Bg:62 [LYS] | B5:2591 [C] | 3.84 | B5:2440 [G] | 20.6 | ||
Bg:63 [VAL] | B5:2360 [A] | 4.46 | 12.07 | |||
Bg:63 [VAL] | B5:2361 [G] | 4.01 | 12.07 | |||
Bg:64 [LEU] | B5:2440 [G] | 4.23 | B5:2591 [C] | 41.74 | ||
Bg:64 [LEU] | B5:2591 [C] | 3.86 | B5:2440 [G] | 41.74 | ||
Bg:64 [LEU] | B5:2592 [C] | 3.57 | B5:2439 [G] | 41.74 | ||
Bg:65 [MET] | B5:2383 [C] | 3.81 | B5:2619 [G] | 40.89 | ||
Bg:65 [MET] | B5:2384 [G] | 4.35 | B5:2618 [C] | 40.89 | ||
Bg:65 [MET] | B5:2591 [C] | 3.44 | B5:2440 [G] | 40.89 | ||
Bg:65 [MET] | B5:2592 [C] | 3.54 | B5:2439 [G] | 40.89 | ||
Bg:66 [ARG] | B5:2360 [A] | 2.94 | sugar:SC | 65.79 | ||
Bg:66 [ARG] | B5:2361 [G] | 3.35 | 65.79 | |||
Bg:66 [ARG] | B5:2382 [C] | 3.68 | B5:2620 [G] | 65.79 | ||
Bg:66 [ARG] | B5:2383 [C] | 3.41 | B5:2619 [G] | 65.79 | ||
Bg:67 [LEU] | B5:2612 [U] | 3.29 | base:BB | 51.83 | ||
Bg:67 [LEU] | B5:2613 [C] | 4.91 | B5:2392 [G] | 51.83 | ||
Bg:68 [SER] | B5:2430 [A] | 2.78 | 72.97 | |||
Bg:68 [SER] | B5:2612 [U] | 3.7 | 72.97 | |||
Bg:68 [SER] | B5:2613 [C] | 3.68 | B5:2392 [G] | 72.97 | ||
Bg:69 [LYS] | B5:2431 [C] | 4.06 | 77.85 | |||
Bg:69 [LYS] | B5:2433 [G] | 4.64 | B5:2598 [A] | 77.85 | ||
Bg:69 [LYS] | B5:2593 [G] | 3.84 | B5:2438 [C] | 77.85 | ||
Bg:69 [LYS] | B5:2594 [G] | 3.3 | B5:2437 [C] | 77.85 | ||
Bg:69 [LYS] | B5:2612 [U] | 3.22 | 77.85 | |||
Bg:70 [THR] | B5:2428 [C] | 3.95 | B5:2419 [G] | 77.74 | ||
Bg:70 [THR] | B5:2429 [G] | 4.99 | 77.74 | |||
Bg:70 [THR] | B5:2430 [A] | 2.75 | 77.74 | |||
Bg:70 [THR] | B5:2431 [C] | 4.47 | 77.74 | |||
Bg:71 [LYS] | B5:2430 [A] | 3.72 | 55.76 | |||
Bg:72 [LYS] | B5:2592 [C] | 2.77 | B5:2439 [G] | 82.29 | ||
Bg:72 [LYS] | B5:2593 [G] | 3.15 | B5:2438 [C] | 82.29 | ||
Bg:72 [LYS] | B5:2612 [U] | 2.72 | base:SC | 82.29 | ||
Bg:73 [HIS] | B5:2427 [G] | 4.12 | B5:2420 [C] | 83.65 | ||
Bg:73 [HIS] | B5:2593 [G] | 3.43 | B5:2438 [C] | 83.65 | ||
Bg:73 [HIS] | B5:2594 [G] | 2.69 | B5:2437 [C] | 83.65 | ||
Bg:74 [VAL] | B5:2426 [C] | 3.59 | B5:2421 [G] | 86.69 | ||
Bg:74 [VAL] | B5:2427 [G] | 4.06 | B5:2420 [C] | 86.69 | ||
Bg:75 [SER] | B5:2420 [C] | 4.51 | B5:2427 [G] | 73.63 | ||
Bg:75 [SER] | B5:2421 [G] | 4.26 | B5:2426 [C] | 73.63 | ||
Bg:75 [SER] | B5:2426 [C] | 2.71 | B5:2421 [G] | base:BB | 73.63 | |
Bg:75 [SER] | B5:2427 [G] | 2.78 | B5:2420 [C] | base:SC | 73.63 | |
Bg:75 [SER] | B5:2428 [C] | 3.77 | B5:2419 [G] | 73.63 | ||
Bg:76 [ARG] | B5:2425 [A] | 2.83 | B5:2422 [G] | 99.0 | ||
Bg:76 [ARG] | B5:2426 [C] | 2.69 | B5:2421 [G] | 99.0 | ||
Bg:76 [ARG] | B5:2594 [G] | 4.93 | B5:2437 [C] | 99.0 | ||
Bg:76 [ARG] | B5:2595 [G] | 4.61 | B5:2436 [C] | 99.0 | ||
Bg:77 [ALA] | B5:2594 [G] | 4.37 | B5:2437 [C] | 51.24 | ||
Bg:77 [ALA] | B5:2595 [G] | 3.64 | B5:2436 [C] | 51.24 | ||
Bg:78 [TYR] | B5:2594 [G] | 3.16 | B5:2437 [C] | 81.31 | ||
Bg:78 [TYR] | B5:2595 [G] | 3.5 | B5:2436 [C] | 81.31 | ||
Bg:78 [TYR] | B5:3851 [C] | 4.57 | 81.31 | |||
Bg:79 [GLY] | B5:2593 [G] | 3.15 | B5:2438 [C] | sugar:BB | 96.63 | |
Bg:79 [GLY] | B5:2594 [G] | 3.13 | B5:2437 [C] | 96.63 | ||
Bg:80 [GLY] | B5:2593 [G] | 3.29 | B5:2438 [C] | 98.51 | ||
Bg:81 [SER] | B5:2439 [G] | 4.4 | B5:2592 [C] | 11.4 | ||
Bg:81 [SER] | B5:2593 [G] | 3.11 | B5:2438 [C] | base:SC | 11.4 | |
Bg:81 [SER] | B5:2594 [G] | 3.78 | B5:2437 [C] | 11.4 | ||
Bg:84 [ALA] | B5:2425 [A] | 4.0 | B5:2422 [G] | 63.32 | ||
Bg:84 [ALA] | B5:2426 [C] | 4.51 | B5:2421 [G] | 63.32 | ||
Bg:88 [ARG] | B5:2497 [C] | 4.04 | B5:2523 [G] | 62.86 | ||
Bg:90 [ARG] | B5:3850 [G] | 2.89 | 59.89 | |||
Bg:90 [ARG] | B5:3851 [C] | 2.66 | 59.89 | |||
Bg:93 [ARG] | B5:3848 [U] | 3.39 | sugar:SC | 48.66 | ||
Bg:93 [ARG] | B5:3849 [G] | 3.74 | 48.66 | |||
Bg:93 [ARG] | B5:3850 [G] | 3.3 | 48.66 | |||
Bg:94 [ALA] | B5:3850 [G] | 3.35 | 72.5 | |||
Bg:96 [LEU] | B5:3848 [U] | 3.6 | 74.69 | |||
Bg:97 [ILE] | B5:3848 [U] | 3.53 | 8.24 | |||
Bg:97 [ILE] | B5:3850 [G] | 3.33 | 8.24 | |||
Bg:98 [GLU] | B5:3850 [G] | 2.84 | base:SC | 47.69 | ||
Bg:98 [GLU] | B5:3851 [C] | 4.31 | 47.69 | |||
Bg:100 [GLN] | B5:3847 [C] | 3.74 | 51.2 | |||
Bg:100 [GLN] | B5:3848 [U] | 3.46 | 51.2 | |||
Bg:101 [LYS] | B5:3850 [G] | 2.99 | base:SC | 58.88 | ||
Bg:101 [LYS] | B5:3851 [C] | 4.55 | 58.88 | |||
Bg:112 [GLN] | B5:3824 [C] | 4.01 | 9.43 | |||
Bg:112 [GLN] | B5:3825 [G] | 4.42 | B5:3840 [C] | 9.43 | ||
Bg:115 [LYS] | B5:3824 [C] | 3.15 | sugar:BB | 55.36 | ||
Bg:115 [LYS] | B5:3825 [G] | 3.16 | B5:3840 [C] | 55.36 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group52 | 7O7Y_Bg_B5 | Bg: 60s ribosomal protein l34, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) | G1TXG5 | RPL34 | Eukaryotic large subunit ribosomal RNA | ✔ |
Interologs
Total number of interologs for this interface: 2
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_h_3 | 7O7Y_Bg_B5 | 0.67 | 0.89 | 1.87 | 0.36 | RPL34 | compare | |
6AZ3_h_1,2 | 7O7Y_Bg_B5 | 0.73 | 0.92 | 1.58 | 0.41 | RPL34 | Eukaryotic large subunit ribosomal RNA | compare |