Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_i
|
6AZ3_2
|
7O7Y_Bi
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
i:68 [LYS] | 2:465 [A] | Bi:65 [LYS] | B5:3455 [A] | ✔ |
i:77 [LYS] | 2:469 [G] | Bi:74 [LYS] | B5:3459 [A] | ✔ |
i:77 [LYS] | 2:470 [A] | Bi:74 [LYS] | B5:3460 [A] | ✔ |
i:78 [LYS] | 2:462 [G] | Bi:75 [LYS] | B5:3452 [G] | ✔ |
i:75 [TYR] | 2:463 [U] | Bi:72 [PHE] | B5:3453 [U] | ✔ |
i:71 [ARG] | 2:464 [G] | Bi:68 [ARG] | B5:3454 [G] | ✔ |
i:71 [ARG] | 2:465 [A] | Bi:68 [ARG] | B5:3455 [A] | ✔ |
i:70 [LYS] | 2:466 [C] | Bi:67 [LYS] | B5:3456 [A2M] | ✔ |
i:70 [LYS] | 2:467 [G] | Bi:67 [LYS] | B5:3457 [G] | ✔ |
i:70 [LYS] | 2:469 [G] | Bi:67 [LYS] | B5:3459 [A] | ✔ |
i:83 [PHE] | 2:469 [G] | Bi:80 [HIS] | B5:3459 [A] | ✔ |
i:74 [LYS] | 2:465 [A] | Bi:71 [LYS] | B5:3455 [A] | ✔ |
i:74 [LYS] | 2:466 [C] | Bi:71 [LYS] | B5:3456 [A2M] | ✔ |
i:74 [LYS] | 2:467 [G] | Bi:71 [LYS] | B5:3457 [G] | ✔ |
i:59 [ARG] | 2:463 [U] | Bi:56 [ARG] | B5:3453 [U] | ✔ |
i:68 [LYS] | 2:464 [G] | Bi:65 [LYS] | B5:3454 [G] | ❌ 7O7Y_Bi_B5 |
i:59 [ARG] | 2:462 [G] | Bi:56 [ARG] | B5:3452 [G] | ❌ 6AZ3_i_2 |
i:74 [LYS] | 2:470 [A] | Bi:71 [LYS] | B5:3460 [A] | ❌ 6AZ3_i_2 |
i:78 [LYS] | 2:461 [C] | Bi:75 [LYS] | B5:3451 [A] | ❌ 7O7Y_B5:3451 no longer at interface |
i:83 [PHE] | 2:468 [A] | Bi:80 [HIS] | B5:3458 [A] | ❌ 7O7Y_B5:3458 no longer at interface |
i:74 [LYS] | 2:471 [U] | Bi:71 [LYS] | B5:3461 [U] | ❌ 6AZ3_2:471 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
60S ribosomal protein rpL36 (L36e) | Eukaryotic large subunit ribosomal RNA | 0.91 | 0.65 | 0.60 | 0.81 | 0.9 | 1.0 | 0.8 | 0.91 | 0.78 | 0.50 | 0.50 |
Other pairs involving 6AZ3_i_2 or 7O7Y_Bi_B5
Total number of entries: 2