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All interfaces > All interologs > Interface groups > group53 > 7O7Y_Bi_B5

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Contacts -

7O7Y_Bi
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bi:2 [ALA] B5:1436 [C] 4.23 57.72
Bi:4 [ARG] B5:1436 [C] 3.21 base/AA stacks 17.26
Bi:13 [LYS] B5:71 [C] 3.77 B5:69 [A] 62.62
Bi:14 [GLY] B5:72 [C] 3.47 83.35
Bi:15 [HIS] B5:72 [C] 2.63 base/AA stacks 71.08
Bi:16 [LYS] B5:72 [C] 4.99 34.96
Bi:17 [VAL] B5:72 [C] 3.31 75.74
Bi:17 [VAL] B5:73 [A] 4.0 B5:68 [U] 75.74
Bi:23 [LYS] B5:160 [G] 3.96 B5:275 [C] 12.72
Bi:25 [ARG] B5:159 [C] 3.34 53.61
Bi:25 [ARG] B5:326 [C] 4.83 B5:311 [G] 53.61
Bi:26 [HIS] B5:158 [A] 3.23 B5:276 [C] base:SC 47.79
Bi:26 [HIS] B5:159 [C] 3.31 47.79
Bi:26 [HIS] B5:160 [G] 3.2 B5:275 [C] base/AA stacks 47.79
Bi:26 [HIS] B5:276 [C] 2.97 B5:158 [A] base:SC 47.79
Bi:27 [SER] B5:158 [A] 3.55 B5:276 [C] 61.9
Bi:27 [SER] B5:159 [C] 2.95 61.9
Bi:27 [SER] B5:327 [U] 3.17 B5:310 [G] 61.9
Bi:28 [ARG] B5:310 [G] 4.72 B5:327 [U] 8.68
Bi:28 [ARG] B5:325 [U] 3.38 B5:312 [G] base/AA stacks 8.68
Bi:28 [ARG] B5:326 [C] 3.16 B5:311 [G] 8.68
Bi:28 [ARG] B5:327 [U] 3.32 B5:310 [G] 8.68
Bi:29 [ARG] B5:158 [A] 4.87 B5:276 [C] 51.53
Bi:29 [ARG] B5:276 [C] 3.38 B5:158 [A] base/AA stacks 51.53
Bi:29 [ARG] B5:277 [G] 2.68 51.53
Bi:29 [ARG] B5:327 [U] 4.97 B5:310 [G] 51.53
Bi:30 [ARG] B5:277 [G] 3.33 base/AA stacks 53.57
Bi:30 [ARG] B5:278 [G] 2.93 B5:112 [C] 53.57
Bi:30 [ARG] B5:310 [G] 3.03 B5:327 [U] 53.57
Bi:30 [ARG] B5:327 [U] 2.48 B5:310 [G] sugar:SC 53.57
Bi:30 [ARG] B5:328 [A] 2.94 53.57
Bi:30 [ARG] B5:329 [A] 3.99 53.57
Bi:31 [GLY] B5:277 [G] 4.68 59.86
Bi:31 [GLY] B5:308 [G] 2.85 sugar:BB 59.86
Bi:31 [GLY] B5:309 [C] 4.04 59.86
Bi:31 [GLY] B5:310 [G] 3.83 B5:327 [U] 59.86
Bi:32 [ARG] B5:277 [G] 4.39 0.42
Bi:32 [ARG] B5:308 [G] 3.73 0.42
Bi:32 [ARG] B5:309 [C] 3.64 0.42
Bi:33 [LEU] B5:308 [G] 3.17 0.0
Bi:33 [LEU] B5:309 [C] 3.14 0.0
Bi:34 [THR] B5:276 [C] 3.36 B5:158 [A] 65.82
Bi:34 [THR] B5:277 [G] 3.85 65.82
Bi:35 [LYS] B5:274 [C] 4.07 B5:161 [G] 65.22
Bi:35 [LYS] B5:275 [C] 2.58 B5:160 [G] 65.22
Bi:36 [HIS] B5:115 [C] 3.74 71.75
Bi:36 [HIS] B5:116 [G] 3.21 B5:155 [C] 71.75
Bi:36 [HIS] B5:276 [C] 3.32 B5:158 [A] 71.75
Bi:37 [THR] B5:276 [C] 4.27 B5:158 [A] 33.94
Bi:37 [THR] B5:277 [G] 3.39 33.94
Bi:41 [ARG] B5:308 [G] 2.97 base/AA stacks 77.81
Bi:45 [ARG] B5:307 [A] 3.93 B5:279 [A] 70.26
Bi:51 [ALA] B5:306 [A] 4.54 B5:281 [U] 75.23
Bi:53 [TYR] B5:305 [A] 3.45 B5:282 [C] 87.12
Bi:53 [TYR] B5:306 [A] 3.09 B5:281 [U] 87.12
Bi:54 [GLU] B5:306 [A] 4.27 B5:281 [U] 99.0
Bi:54 [GLU] B5:307 [A] 4.32 B5:279 [A] 99.0
Bi:56 [ARG] B5:3452 [G] 4.91 B5:3465 [A] 83.75
Bi:56 [ARG] B5:3453 [U] 2.95 B5:3464 [A] 83.75
Bi:59 [GLU] B5:3793 [G] 3.07 B5:3680 [C] sugar:SC 87.29
Bi:59 [GLU] B5:3794 [U] 3.33 B5:3679 [A] 87.29
Bi:62 [LYS] B5:3793 [G] 4.63 B5:3680 [C] 80.35
Bi:63 [VAL] B5:3680 [C] 4.99 B5:3793 [G] 53.1
Bi:63 [VAL] B5:3681 [A] 3.8 B5:3791 [U] 53.1
Bi:63 [VAL] B5:3793 [G] 4.92 B5:3680 [C] 53.1
Bi:65 [LYS] B5:3455 [A] 3.83 B5:3462 [PSU] 59.88
Bi:65 [LYS] B5:3680 [C] 3.3 B5:3793 [G] 59.88
Bi:65 [LYS] B5:3681 [A] 3.71 B5:3791 [U] 59.88
Bi:67 [LYS] B5:3456 [A2M] 3.48 B5:3461 [U] 94.56
Bi:67 [LYS] B5:3457 [G] 3.0 B5:3460 [A] base:SC 94.56
Bi:67 [LYS] B5:3459 [A] 4.65 94.56
Bi:68 [ARG] B5:3454 [G] 3.27 B5:3463 [C] 77.08
Bi:68 [ARG] B5:3455 [A] 2.67 B5:3462 [PSU] 77.08
Bi:71 [LYS] B5:3455 [A] 4.82 B5:3462 [PSU] 91.46
Bi:71 [LYS] B5:3456 [A2M] 3.94 B5:3461 [U] 91.46
Bi:71 [LYS] B5:3457 [G] 2.96 B5:3460 [A] base:SC 91.46
Bi:71 [LYS] B5:3460 [A] 4.27 B5:3457 [G] 91.46
Bi:71 [LYS] B5:3461 [U] 3.74 B5:3456 [A2M] 91.46
Bi:72 [PHE] B5:3453 [U] 4.59 B5:3464 [A] 58.46
Bi:74 [LYS] B5:3459 [A] 4.08 91.56
Bi:74 [LYS] B5:3460 [A] 3.15 B5:3457 [G] 91.56
Bi:75 [LYS] B5:285 [G] 4.77 B5:302 [C] 61.4
Bi:75 [LYS] B5:304 [C] 3.71 B5:283 [G] sugar:BB 61.4
Bi:75 [LYS] B5:3452 [G] 3.29 B5:3465 [A] 61.4
Bi:76 [ARG] B5:283 [G] 4.1 B5:304 [C] 90.67
Bi:76 [ARG] B5:304 [C] 2.63 B5:283 [G] sugar:BB 90.67
Bi:76 [ARG] B5:305 [A] 2.76 B5:282 [C] 90.67
Bi:77 [VAL] B5:283 [G] 2.87 B5:304 [C] base:BB 74.02
Bi:77 [VAL] B5:284 [G] 4.24 B5:303 [C] 74.02
Bi:77 [VAL] B5:304 [C] 4.65 B5:283 [G] 74.02
Bi:77 [VAL] B5:305 [A] 4.65 B5:282 [C] 74.02
Bi:77 [VAL] B5:306 [A] 4.56 B5:281 [U] 74.02
Bi:78 [GLY] B5:283 [G] 4.85 B5:304 [C] 88.3
Bi:78 [GLY] B5:284 [G] 3.25 B5:303 [C] sugar:BB 88.3
Bi:79 [THR] B5:283 [G] 3.47 B5:304 [C] 72.47
Bi:79 [THR] B5:284 [G] 3.67 B5:303 [C] 72.47
Bi:80 [HIS] B5:319 [A] 3.37 B5:4104 [U] 67.64
Bi:80 [HIS] B5:320 [C] 3.18 B5:4103 [G] 67.64
Bi:80 [HIS] B5:3459 [A] 4.59 67.64
Bi:81 [ILE] B5:311 [G] 4.05 B5:326 [C] 28.87
Bi:82 [ARG] B5:282 [C] 2.8 B5:305 [A] base:SC, base:SC 76.16
Bi:82 [ARG] B5:283 [G] 3.38 B5:304 [C] 76.16
Bi:82 [ARG] B5:306 [A] 3.22 B5:281 [U] base/AA stacks 76.16
Bi:82 [ARG] B5:311 [G] 3.22 B5:326 [C] 76.16
Bi:82 [ARG] B5:312 [G] 3.07 B5:325 [U] 76.16
Bi:84 [LYS] B5:320 [C] 2.62 B5:4103 [G] 76.33
Bi:84 [LYS] B5:321 [U] 4.76 B5:4102 [G] 76.33
Bi:85 [ARG] B5:307 [A] 3.54 B5:279 [A] 35.41
Bi:85 [ARG] B5:308 [G] 4.07 35.41
Bi:85 [ARG] B5:309 [C] 4.72 35.41
Bi:85 [ARG] B5:310 [G] 3.34 B5:327 [U] 35.41
Bi:85 [ARG] B5:311 [G] 4.49 B5:326 [C] 35.41
Bi:86 [LYS] B5:306 [A] 3.14 B5:281 [U] 91.7
Bi:86 [LYS] B5:307 [A] 2.88 B5:279 [A] 91.7
Bi:89 [GLU] B5:307 [A] 4.3 B5:279 [A] 53.45
Bi:89 [GLU] B5:308 [G] 4.29 53.45

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group53 7O7Y_Bi_B5 Bi: 60s ribosomal protein l36, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1TTQ5 60S ribosomal protein rpL36 (L36e) Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_i_2 7O7Y_Bi_B5 0.91 0.91 0.65 0.6 60S ribosomal protein rpL36 (L36e) Eukaryotic large subunit ribosomal RNA compare
6AZ3_i_1 7O7Y_Bi_B5 0.55 0.92 2.12 0.32 60S ribosomal protein rpL36 (L36e) Eukaryotic large subunit ribosomal RNA compare