RNAprotDB

Interface analysis

Contacts -

1VQ8_Q	1VQ8_9	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
Q:19 [ARG]	9:3010 [C]	4.81	9:3013 [A]			74.56
Q:19 [ARG]	9:3011 [A]	2.69	9:3068 [G]		base/AA stacks	74.56
Q:19 [ARG]	9:3012 [C]	2.99				74.56
Q:19 [ARG]	9:3069 [U]	3.21	9:3112 [U]	sugar:SC		74.56
Q:19 [ARG]	9:3070 [U]	4.35	9:3111 [U]			74.56
Q:25 [PRO]	9:3009 [C]	3.46	9:3114 [G]			66.26
Q:25 [PRO]	9:3010 [C]	3.89	9:3013 [A]			66.26
Q:26 [PRO]	9:3008 [G]	4.22	9:3115 [C]			67.41
Q:27 [GLN]	9:3008 [G]	3.51	9:3115 [C]			65.13
Q:27 [GLN]	9:3009 [C]	3.51	9:3114 [G]			65.13
Q:28 [ARG]	9:3009 [C]	4.66	9:3114 [G]			34.34
Q:28 [ARG]	9:3010 [C]	4.1	9:3013 [A]			34.34

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID	Structure ID	Structure description	UniProt ID	ECOD label(s)	RFAM label(s)	Is ribosome?	RCSB PDB link
group56	1VQ8_Q_9	Q: 50s ribosomal protein l21e, Haloarcula marismortui (natural) 9: 5s ribosomal RNA, Haloarcula marismortui (natural)	P12734	SH3	5S ribosomal RNA	✔

Interologs