RNAprotDB

Interface analysis

1VQ8_Q	1VQ8_9	6AZ3_S	6AZ3_8	Conserved?
Q:19 [ARG]	9:3011 [A]	S:20 [ARG]	8:13 [A]	✔
Q:19 [ARG]	9:3069 [U]	S:20 [ARG]	8:69 [C]	✔
Q:19 [ARG]	9:3070 [U]	S:20 [ARG]	8:70 [U]	✔
Q:28 [ARG]	9:3009 [C]	S:29 [THR]	8:11 [C]	✔
Q:27 [GLN]	9:3008 [G]	S:28 [SER]	8:10 [A]	✔
Q:27 [GLN]	9:3009 [C]	S:28 [SER]	8:11 [C]	✔
Q:26 [PRO]	9:3008 [G]	S:27 [VAL]	8:10 [A]	✔
Q:25 [PRO]	9:3009 [C]	S:26 [SER]	8:11 [C]	✔
Q:19 [ARG]	9:3010 [C]	S:20 [ARG]	8:12 [C]	❌ 6AZ3_S_8
Q:28 [ARG]	9:3010 [C]	S:29 [THR]	8:12 [C]	❌ 6AZ3_S_8
Q:25 [PRO]	9:3010 [C]	S:26 [SER]	8:12 [C]	❌ 6AZ3_S_8
Q:26 [PRO]	9:3009 [C]	S:27 [VAL]	8:11 [C]	❌ 1VQ8_Q_9
Q:19 [ARG]	9:3012 [C]	S:20 [ARG]	8:14 [U]	❌ 6AZ3_8:14 no longer at interface
Q:20 [ASP]	9:3011 [A]	S:21 [LYS]	8:13 [A]	❌ 1VQ8_Q:20 no longer at interface
Q:20 [ASP]	9:3010 [C]	S:21 [LYS]	8:12 [C]	❌ 1VQ8_Q:20 no longer at interface

Export the table of contacts

Common ECOD label(s)	Common RFAM label(s)	Interface TM-score	Interface RMSD	Percentage identity	Protein TM-score	RNA TM-score	Protein coverage	RNA coverage	Percentage conservation	Apolar conservation	H-bond conservation	Percentage switching out
SH3	5S ribosomal RNA	0.89	2.38	0.20	0.89	0.82	1.0	1.0	0.77	0.00	0.00	0.43

Other pairs involving 1VQ8_Q_9 or 6AZ3_S_8

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Common RFAM label(s)	Explore both interfaces
1YHQ_Q_9	6AZ3_S_8	0.74	0.89	2.31	0.2	SH3	5S ribosomal RNA	compare
1VQ8_Q_9	6AZ3_S_8	0.77	0.89	2.38	0.2	SH3	5S ribosomal RNA	compare
1VQ8_Q_9	7O7Y_BT_B7	0.82	0.9	1.86	0.4	SH3	5S ribosomal RNA	compare
6AZ3_S_8	7O7Y_BT_B7	0.93	0.92	0.9	0.5	SH3	5S ribosomal RNA	compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

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