RNAprotDB

Interface analysis

Contacts -

1YHQ_Q	1YHQ_9	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
Q:19 [ARG]	9:10 [C]	4.86	9:13 [A]			74.56
Q:19 [ARG]	9:11 [A]	2.74	9:68 [G]		base/AA stacks	74.56
Q:19 [ARG]	9:12 [C]	3.15				74.56
Q:19 [ARG]	9:69 [U]	3.12	9:112 [U]	sugar:SC		74.56
Q:19 [ARG]	9:70 [U]	4.24	9:111 [U]			74.56
Q:25 [PRO]	9:9 [C]	3.46	9:114 [G]			66.26
Q:25 [PRO]	9:10 [C]	3.76	9:13 [A]			66.26
Q:26 [PRO]	9:8 [G]	4.24	9:115 [C]			67.41
Q:27 [GLN]	9:8 [G]	3.65	9:115 [C]			65.13
Q:27 [GLN]	9:9 [C]	3.42	9:114 [G]			65.13
Q:28 [ARG]	9:9 [C]	4.67	9:114 [G]			34.34
Q:28 [ARG]	9:10 [C]	3.99	9:13 [A]			34.34

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID	Structure ID	Structure description	UniProt ID	ECOD label(s)	RFAM label(s)	Is ribosome?	RCSB PDB link
group56	1YHQ_Q_9	Q: 50s ribosomal protein l21e, Haloarcula marismortui (natural) 9: 5s ribosomal RNA, Haloarcula marismortui (natural)	P12734	SH3	5S ribosomal RNA	✔

Interologs