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All interfaces > All interologs > Interface groups > group56 > 6AZ3_S_8

Interface analysis

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Protein

Cartoon
Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

6AZ3_S
6AZ3_8
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
S:20 [ARG] 8:13 [A] 3.9 80.1
S:20 [ARG] 8:69 [C] 3.68 8:110 [G] 80.1
S:20 [ARG] 8:70 [U] 3.33 8:109 [A] 80.1
S:21 [LYS] 8:12 [C] 4.65 43.6
S:21 [LYS] 8:13 [A] 4.76 43.6
S:26 [SER] 8:11 [C] 3.21 8:112 [G] 42.3
S:27 [VAL] 8:10 [A] 3.47 8:113 [C] 57.0
S:27 [VAL] 8:11 [C] 3.32 8:112 [G] 57.0
S:28 [SER] 8:10 [A] 3.82 8:113 [C] 72.8
S:28 [SER] 8:11 [C] 2.97 8:112 [G] 72.8
S:29 [THR] 8:11 [C] 4.98 8:112 [G] 57.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group56 6AZ3_S_8 S: 60s ribosomal protein l21, putative, Leishmania donovani (natural) 8: rRNA 5s, Leishmania donovani (natural) A0A3Q8ICH0 SH3 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_Q_9 6AZ3_S_8 0.77 0.89 2.38 0.2 SH3 5S ribosomal RNA compare
1YHQ_Q_9 6AZ3_S_8 0.74 0.89 2.31 0.2 SH3 5S ribosomal RNA compare
6AZ3_S_8 7O7Y_BT_B7 0.93 0.92 0.9 0.5 SH3 5S ribosomal RNA compare