RNAprotDB

Interface analysis

6AZ3_S	6AZ3_8	7O7Y_BT	7O7Y_B7	Conserved?
S:21 [LYS]	8:12 [C]	BT:21 [LYS]	B7:10 [C]	✔
S:29 [THR]	8:11 [C]	BT:29 [THR]	B7:9 [C]	✔
S:20 [ARG]	8:13 [A]	BT:20 [ARG]	B7:11 [A]	✔
S:20 [ARG]	8:69 [C]	BT:20 [ARG]	B7:67 [C]	✔
S:20 [ARG]	8:70 [U]	BT:20 [ARG]	B7:68 [C]	✔
S:26 [SER]	8:11 [C]	BT:26 [PRO]	B7:9 [C]	✔
S:28 [SER]	8:10 [A]	BT:28 [ALA]	B7:8 [G]	✔
S:28 [SER]	8:11 [C]	BT:28 [ALA]	B7:9 [C]	✔
S:27 [VAL]	8:10 [A]	BT:27 [LEU]	B7:8 [G]	✔
S:27 [VAL]	8:11 [C]	BT:27 [LEU]	B7:9 [C]	✔
S:21 [LYS]	8:13 [A]	BT:21 [LYS]	B7:11 [A]	❌ 7O7Y_BT_B7
S:26 [SER]	8:12 [C]	BT:26 [PRO]	B7:10 [C]	❌ 6AZ3_S_8
S:31 [LEU]	8:10 [A]	BT:31 [MET]	B7:8 [G]	❌ 6AZ3_S:31 no longer at interface

Export the table of contacts

Common ECOD label(s)	Common RFAM label(s)	Interface TM-score	Interface RMSD	Percentage identity	Protein TM-score	RNA TM-score	Protein coverage	RNA coverage	Percentage conservation	Apolar conservation	H-bond conservation	Percentage switching out
SH3	5S ribosomal RNA	0.92	0.9	0.50	0.86	0.97	1.0	1.0	0.93	0.27	0.50	0.33

Other pairs involving 6AZ3_S_8 or 7O7Y_BT_B7

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Common RFAM label(s)	Explore both interfaces
1YHQ_Q_9	6AZ3_S_8	0.74	0.89	2.31	0.2	SH3	5S ribosomal RNA	compare
1YHQ_Q_9	7O7Y_BT_B7	0.80	0.9	1.8	0.4	SH3	5S ribosomal RNA	compare
1VQ8_Q_9	6AZ3_S_8	0.77	0.89	2.38	0.2	SH3	5S ribosomal RNA	compare
1VQ8_Q_9	7O7Y_BT_B7	0.82	0.9	1.86	0.4	SH3	5S ribosomal RNA	compare
6AZ3_S_8	7O7Y_BT_B7	0.93	0.92	0.9	0.5	SH3	5S ribosomal RNA	compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

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