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All interfaces > All interologs > Interface groups > group57 > 1VQ8_W_9

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_W
1VQ8_9
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
W:8 [ARG] 9:3085 [A] 3.19 9:3097 [U] 95.08
W:8 [ARG] 9:3086 [G] 2.78 9:3096 [C] 95.08
W:14 [HIS] 9:3084 [G] 3.51 9:3098 [C] 50.69
W:14 [HIS] 9:3085 [A] 3.26 9:3097 [U] 50.69
W:17 [ILE] 9:3084 [G] 4.04 9:3098 [C] 73.39
W:46 [ALA] 9:3083 [G] 4.93 9:3099 [U] 44.27
W:46 [ALA] 9:3099 [U] 4.35 9:3083 [G] 44.27
W:46 [ALA] 9:3100 [G] 4.34 9:3082 [U] 44.27
W:47 [LYS] 9:3084 [G] 4.55 9:3098 [C] 79.72
W:49 [ASN] 9:3099 [U] 3.4 9:3083 [G] 79.4
W:50 [ASP] 9:3084 [G] 2.85 9:3098 [C] base:SC, sugar:SC 82.48
W:50 [ASP] 9:3085 [A] 3.03 9:3097 [U] base/AA stacks 82.48
W:50 [ASP] 9:3098 [C] 4.63 9:3084 [G] 82.48
W:51 [PHE] 9:3084 [G] 4.66 9:3098 [C] 60.42
W:51 [PHE] 9:3085 [A] 3.65 9:3097 [U] 60.42
W:128 [VAL] 9:3086 [G] 4.94 9:3096 [C] 74.99
W:129 [LYS] 9:3086 [G] 2.93 9:3096 [C] sugar:BB 92.09
W:129 [LYS] 9:3087 [U] 2.59 92.09
W:129 [LYS] 9:3088 [G] 4.88 9:3095 [C] 92.09
W:130 [HIS] 9:3086 [G] 3.89 9:3096 [C] 52.54
W:130 [HIS] 9:3087 [U] 4.92 52.54
W:130 [HIS] 9:3088 [G] 2.41 9:3095 [C] 52.54
W:131 [PRO] 9:3098 [C] 3.31 9:3084 [G] 53.43
W:133 [LYS] 9:3098 [C] 3.64 9:3084 [G] 35.04
W:133 [LYS] 9:3099 [U] 2.86 9:3083 [G] 35.04
W:134 [GLU] 9:3097 [U] 2.93 9:3085 [A] 17.41
W:134 [GLU] 9:3098 [C] 3.73 9:3084 [G] 17.41
W:138 [LEU] 9:3085 [A] 4.69 9:3097 [U] 85.26

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group57 1VQ8_W_9 W: 50s ribosomal protein l30p, Haloarcula marismortui (natural) 9: 5s ribosomal RNA, Haloarcula marismortui (natural) P14121 Ribosomal protein L30p/L7e 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_W_9 6AZ3_c_8 0.72 0.85 1.01 0.09 Ribosomal protein L30p/L7e 5S ribosomal RNA compare
1VQ8_W_9 7O7Y_BF_B7 0.74 0.85 1.15 0.18 Ribosomal protein L30p/L7e 5S ribosomal RNA compare
1VQ8_W_9 1YHQ_W_9 0.99 1.0 0.11 1.0 Ribosomal protein L30p/L7e 5S ribosomal RNA compare