RNAprotDB

All interfaces > All interologs > Interface groups > group57 > 1YHQ_W_9 vs 6AZ3_c_8

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1YHQ_W
1YHQ_9
6AZ3_c
6AZ3_8
Conserved?
W:130 [HIS] 9:86 [G] c:229 [ARG] 8:85 [G]
W:130 [HIS] 9:88 [G] c:229 [ARG] 8:87 [C]
W:46 [ALA] 9:99 [U] c:138 [ARG] 8:98 [C]
W:46 [ALA] 9:100 [G] c:138 [ARG] 8:99 [G]
W:129 [LYS] 9:86 [G] c:228 [ARG] 8:85 [G]
W:129 [LYS] 9:87 [U] c:228 [ARG] 8:86 [U]
W:129 [LYS] 9:88 [G] c:228 [ARG] 8:87 [C]
W:50 [ASP] 9:84 [G] c:142 [PRO] 8:83 [A]
W:50 [ASP] 9:85 [A] c:142 [PRO] 8:84 [G]
W:134 [GLU] 9:97 [U] c:233 [GLU] 8:96 [C]
W:134 [GLU] 9:98 [C] c:233 [GLU] 8:97 [U]
W:133 [LYS] 9:98 [C] c:232 [VAL] 8:97 [U]
W:133 [LYS] 9:99 [U] c:232 [VAL] 8:98 [C]
W:131 [PRO] 9:98 [C] c:230 [HIS] 8:97 [U]
W:138 [LEU] 9:85 [A] c:237 [TYR] 8:84 [G]
W:49 [ASN] 9:99 [U] c:141 [GLU] 8:98 [C]
W:14 [HIS] 9:85 [A] c:106 [ASN] 8:84 [G]
W:50 [ASP] 9:98 [C] c:142 [PRO] 8:97 [U] ❌ 6AZ3_c_8
W:49 [ASN] 9:84 [G] c:141 [GLU] 8:83 [A] ❌ 6AZ3_c_8
W:14 [HIS] 9:84 [G] c:106 [ASN] 8:83 [A] ❌ 6AZ3_c_8
W:129 [LYS] 9:85 [A] c:228 [ARG] 8:84 [G] ❌ 1YHQ_W_9
W:130 [HIS] 9:97 [U] c:229 [ARG] 8:96 [C] ❌ 1YHQ_W_9
W:130 [HIS] 9:85 [A] c:229 [ARG] 8:84 [G] ❌ 1YHQ_W_9
W:131 [PRO] 9:99 [U] c:230 [HIS] 8:98 [C] ❌ 1YHQ_W_9
W:134 [GLU] 9:85 [A] c:233 [GLU] 8:84 [G] ❌ 1YHQ_W_9
W:134 [GLU] 9:86 [G] c:233 [GLU] 8:85 [G] ❌ 1YHQ_W_9
W:51 [PHE] 9:84 [G] c:143 [TYR] 8:83 [A] ❌ 6AZ3_c:143 no longer at interface
W:51 [PHE] 9:85 [A] c:143 [TYR] 8:84 [G] ❌ 6AZ3_c:143 no longer at interface
W:8 [ARG] 9:85 [A] c:100 [ARG] 8:84 [G] ❌ 6AZ3_c:100 no longer at interface
W:8 [ARG] 9:86 [G] c:100 [ARG] 8:85 [G] ❌ 6AZ3_c:100 no longer at interface
W:17 [ILE] 9:84 [G] c:109 [GLN] 8:83 [A] ❌ 6AZ3_c:109 no longer at interface
W:47 [LYS] 9:84 [G] c:139 [ALA] 8:83 [A] ❌ 6AZ3_c:139 no longer at interface
W:128 [VAL] 9:86 [G] c:227 [LYS] 8:85 [G] ❌ 6AZ3_c:227 no longer at interface
W:127 [GLY] 9:88 [G] c:226 [GLN] 8:87 [C] ❌ 1YHQ_W:127 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
Common RFAM label(s)
Interface TM-score
Interface RMSD
Percentage identity
Protein TM-score
RNA TM-score
Protein coverage
RNA coverage
Percentage conservation
Apolar conservation
H-bond conservation
Percentage switching out
Ribosomal protein L30p/L7e 5S ribosomal RNA 0.85 1.04 0.09 0.86 0.82 0.91 1.0 0.72 0.68 0.14 0.47


Other pairs involving 1YHQ_W_9 or 6AZ3_c_8

Total number of entries: 5