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All interfaces > All interologs > Interface groups > group58 > 1VQ8_Y_0

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Licorice
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Licorice
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Conservation*

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Rim - Core

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1VQ8_Y
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Y:112 [GLU] 0:1267 [C] 4.04 0:1089 [G] 28.92
Y:115 [ARG] 0:1266 [U] 2.68 0:1090 [A] 50.29
Y:115 [ARG] 0:1267 [C] 3.62 0:1089 [G] 50.29
Y:116 [LEU] 0:1266 [U] 4.49 0:1090 [A] 56.23
Y:116 [LEU] 0:1267 [C] 3.71 0:1089 [G] 56.23
Y:118 [THR] 0:595 [U] 3.7 0:562 [A] 46.17
Y:118 [THR] 0:596 [C] 4.08 0:561 [G] 46.17
Y:119 [GLN] 0:1266 [U] 2.53 0:1090 [A] sugar:SC 34.31
Y:119 [GLN] 0:1267 [C] 3.21 0:1089 [G] sugar:SC 34.31
Y:120 [ARG] 0:1326 [U] 3.58 0:1331 [A] 80.27
Y:120 [ARG] 0:1327 [G] 2.89 0:1330 [A] 80.27
Y:121 [HIS] 0:555 [U] 3.6 0:602 [A] 40.99
Y:121 [HIS] 0:556 [C] 3.24 0:601 [G] 40.99
Y:122 [ARG] 0:594 [C] 3.08 0:563 [C] 40.79
Y:122 [ARG] 0:595 [U] 3.11 0:562 [A] 40.79
Y:123 [VAL] 0:1090 [A] 4.61 0:1266 [U] 44.06
Y:123 [VAL] 0:1091 [U] 3.85 0:1265 [G] 44.06
Y:125 [LYS] 0:541 [C] 4.95 0:615 [G] 67.57
Y:125 [LYS] 0:1327 [G] 3.54 0:1330 [A] 67.57
Y:125 [LYS] 0:1328 [A] 3.91 67.57
Y:125 [LYS] 0:1329 [A] 2.84 67.57
Y:126 [PRO] 0:540 [A] 4.81 0:616 [U] 90.48
Y:126 [PRO] 0:541 [C] 3.29 0:615 [G] 90.48
Y:126 [PRO] 0:1329 [A] 4.46 90.48
Y:127 [GLN] 0:540 [A] 3.07 0:616 [U] 22.61
Y:127 [GLN] 0:541 [C] 2.88 0:615 [G] 22.61
Y:127 [GLN] 0:1329 [A] 4.29 22.61
Y:128 [PHE] 0:541 [C] 4.93 0:615 [G] 96.1
Y:128 [PHE] 0:1328 [A] 3.08 96.1
Y:128 [PHE] 0:1329 [A] 3.62 96.1
Y:129 [ASN] 0:540 [A] 4.91 0:616 [U] 10.18
Y:130 [ARG] 0:905 [C] 4.44 0:1300 [G] 90.42
Y:130 [ARG] 0:1356 [A] 2.66 90.42
Y:130 [ARG] 0:1357 [A] 4.72 90.42
Y:131 [GLN] 0:621 [C] 3.46 0:634 [G] 69.83
Y:131 [GLN] 0:622 [G] 3.05 0:633 [C] 69.83
Y:131 [GLN] 0:1356 [A] 4.58 69.83
Y:132 [ASP] 0:620 [A] 2.52 0:635 [A] sugar:SC 66.87
Y:132 [ASP] 0:621 [C] 2.86 0:634 [G] 66.87
Y:132 [ASP] 0:1356 [A] 3.81 66.87
Y:133 [HIS] 0:540 [A] 4.64 0:616 [U] 48.64
Y:134 [HIS] 0:537 [G] 4.91 0:2059 [U] 45.23
Y:134 [HIS] 0:538 [C] 2.75 sugar:SC 45.23
Y:134 [HIS] 0:539 [G] 3.53 0:617 [C] 45.23
Y:135 [LYS] 0:537 [G] 2.62 0:2059 [U] sugar:SC 74.71
Y:135 [LYS] 0:538 [C] 3.33 74.71
Y:135 [LYS] 0:620 [A] 2.81 0:635 [A] sugar:SC 74.71
Y:136 [LYS] 0:636 [G] 4.51 0:1365 [C] 43.03
Y:136 [LYS] 0:637 [C] 2.57 0:1364 [G] 43.03
Y:136 [LYS] 0:638 [C] 3.66 0:1363 [G] 43.03
Y:136 [LYS] 0:1356 [A] 3.92 43.03
Y:136 [LYS] 0:2059 [U] 2.72 0:537 [G] sugar:SC 43.03
Y:136 [LYS] 0:2060 [A] 4.25 0:2076 [U] 43.03
Y:137 [LYS] 0:16 [A] 4.74 0:527 [U] 53.63
Y:137 [LYS] 0:520 [A] 4.96 0:23 [G] 53.63
Y:137 [LYS] 0:521 [A] 2.86 0:22 [U] 53.63
Y:137 [LYS] 0:522 [U] 3.03 0:21 [G] 53.63
Y:137 [LYS] 0:638 [C] 3.5 0:1363 [G] 53.63
Y:137 [LYS] 0:639 [A] 4.54 0:1362 [U] 53.63
Y:138 [ARG] 0:635 [A] 4.91 0:620 [A] 74.36
Y:138 [ARG] 0:637 [C] 3.49 0:1364 [G] 74.36
Y:138 [ARG] 0:638 [C] 2.68 0:1363 [G] 74.36
Y:138 [ARG] 0:639 [A] 3.53 0:1362 [U] 74.36
Y:138 [ARG] 0:1356 [A] 3.01 base:SC, base:SC, sugar:SC 74.36
Y:139 [VAL] 0:1356 [A] 3.45 57.76
Y:141 [THR] 0:1330 [A] 4.92 0:1327 [G] 11.79
Y:142 [SER] 0:1330 [A] 3.69 0:1327 [G] 50.4
Y:142 [SER] 0:1331 [A] 2.35 0:1326 [U] 50.4
Y:143 [TRP] 0:905 [C] 4.7 0:1300 [G] 97.92
Y:143 [TRP] 0:906 [C] 3.47 0:1299 [G] 97.92
Y:143 [TRP] 0:907 [A] 2.98 0:1298 [U] 97.92
Y:143 [TRP] 0:1329 [A] 3.32 97.92
Y:143 [TRP] 0:1330 [A] 2.84 0:1327 [G] 97.92
Y:144 [ARG] 0:905 [C] 3.06 0:1300 [G] 96.68
Y:144 [ARG] 0:906 [C] 3.19 0:1299 [G] 96.68
Y:144 [ARG] 0:1330 [A] 4.09 0:1327 [G] 96.68
Y:144 [ARG] 0:1331 [A] 3.26 0:1326 [U] 96.68
Y:144 [ARG] 0:1356 [A] 4.35 96.68
Y:145 [LYS] 0:906 [C] 2.76 0:1299 [G] 65.11
Y:145 [LYS] 0:907 [A] 3.51 0:1298 [U] 65.11
Y:146 [PRO] 0:622 [G] 4.47 0:633 [C] 91.69
Y:147 [ARG] 0:622 [G] 3.8 0:633 [C] 75.92
Y:147 [ARG] 0:623 [U] 4.53 0:632 [A] 75.92
Y:147 [ARG] 0:906 [C] 2.89 0:1299 [G] 75.92
Y:148 [GLY] 0:621 [C] 4.95 0:634 [G] 98.95
Y:148 [GLY] 0:622 [G] 2.66 0:633 [C] 98.95
Y:148 [GLY] 0:623 [U] 3.5 0:632 [A] 98.95
Y:149 [GLN] 0:623 [U] 3.15 0:632 [A] 37.35
Y:149 [GLN] 0:1071 [G] 4.08 0:913 [A] 37.35
Y:149 [GLN] 0:1072 [G] 4.97 0:1088 [A] 37.35
Y:149 [GLN] 0:1293 [U] 2.53 0:912 [A] sugar:SC 37.35
Y:149 [GLN] 0:1294 [A] 3.65 0:911 [G] 37.35
Y:150 [LEU] 0:621 [C] 4.1 0:634 [G] 78.57
Y:150 [LEU] 0:622 [G] 4.29 0:633 [C] 78.57
Y:150 [LEU] 0:623 [U] 3.63 0:632 [A] 78.57
Y:150 [LEU] 0:624 [U] 3.71 0:628 [1MA] 78.57
Y:150 [LEU] 0:625 [U] 3.83 0:2071 [C] 78.57
Y:150 [LEU] 0:628 [1MA] 3.3 0:624 [U] 78.57
Y:150 [LEU] 0:629 [A] 4.31 78.57
Y:150 [LEU] 0:1071 [G] 4.88 0:913 [A] 78.57
Y:151 [SER] 0:621 [C] 3.92 0:634 [G] 91.95
Y:151 [SER] 0:622 [G] 3.39 0:633 [C] 91.95
Y:152 [LYS] 0:620 [A] 3.85 0:635 [A] 92.75
Y:152 [LYS] 0:621 [C] 2.75 0:634 [G] 92.75
Y:152 [LYS] 0:629 [A] 2.8 92.75
Y:153 [GLN] 0:621 [C] 4.6 0:634 [G] 61.7
Y:154 [ARG] 0:1071 [G] 3.48 0:913 [A] 97.71
Y:154 [ARG] 0:1072 [G] 2.65 0:1088 [A] 97.71
Y:154 [ARG] 0:1292 [G] 4.82 97.71
Y:154 [ARG] 0:1293 [U] 3.66 0:912 [A] 97.71
Y:155 [ARG] 0:628 [1MA] 4.57 0:624 [U] 52.59
Y:155 [ARG] 0:1072 [G] 3.93 0:1088 [A] 52.59
Y:155 [ARG] 0:1073 [A] 3.19 0:1086 [A] 52.59
Y:155 [ARG] 0:1088 [A] 4.85 0:1072 [G] 52.59
Y:156 [GLY] 0:1073 [A] 2.59 0:1086 [A] sugar:BB 32.86
Y:156 [GLY] 0:1074 [G] 4.33 0:1085 [C] 32.86
Y:156 [GLY] 0:1260 [G] 4.82 32.86
Y:157 [ILE] 0:617 [C] 4.94 0:539 [G] 30.76
Y:157 [ILE] 0:618 [G] 4.3 30.76
Y:157 [ILE] 0:1073 [A] 3.68 0:1086 [A] 30.76
Y:157 [ILE] 0:1074 [G] 3.45 0:1085 [C] 30.76
Y:158 [LYS] 0:539 [G] 4.79 0:617 [C] 61.55
Y:158 [LYS] 0:616 [U] 4.63 0:540 [A] 61.55
Y:158 [LYS] 0:617 [C] 2.59 0:539 [G] sugar:BB 61.55
Y:158 [LYS] 0:618 [G] 3.85 61.55
Y:158 [LYS] 0:1073 [A] 4.28 0:1086 [A] 61.55
Y:158 [LYS] 0:1074 [G] 2.98 0:1085 [C] 61.55
Y:158 [LYS] 0:1075 [G] 3.18 0:1084 [C] 61.55
Y:158 [LYS] 0:1260 [G] 4.09 61.55
Y:159 [GLY] 0:539 [G] 3.03 0:617 [C] base:BB 80.88
Y:159 [GLY] 0:540 [A] 3.45 0:616 [U] 80.88
Y:159 [GLY] 0:617 [C] 3.46 0:539 [G] 80.88
Y:160 [LYS] 0:537 [G] 3.81 0:2059 [U] 66.72
Y:160 [LYS] 0:538 [C] 4.86 66.72
Y:160 [LYS] 0:539 [G] 4.62 0:617 [C] 66.72
Y:160 [LYS] 0:540 [A] 4.79 0:616 [U] 66.72
Y:160 [LYS] 0:618 [G] 3.24 66.72
Y:160 [LYS] 0:620 [A] 2.81 0:635 [A] 66.72
Y:161 [GLY] 0:540 [A] 3.47 0:616 [U] 49.55
Y:162 [ASP] 0:540 [A] 4.37 0:616 [U] 20.95
Y:162 [ASP] 0:541 [C] 4.69 0:615 [G] 20.95
Y:162 [ASP] 0:1091 [U] 4.86 0:1265 [G] 20.95
Y:164 [VAL] 0:906 [C] 4.78 0:1299 [G] 83.49
Y:164 [VAL] 0:907 [A] 3.33 0:1298 [U] 83.49
Y:164 [VAL] 0:908 [A] 4.65 0:1297 [U] 83.49
Y:164 [VAL] 0:1328 [A] 3.64 83.49
Y:164 [VAL] 0:1329 [A] 3.73 83.49
Y:165 [GLU] 0:907 [A] 4.6 0:1298 [U] 58.26
Y:165 [GLU] 0:908 [A] 3.51 0:1297 [U] 58.26
Y:165 [GLU] 0:1089 [G] 3.02 0:1267 [C] 58.26
Y:165 [GLU] 0:1090 [A] 4.42 0:1266 [U] 58.26
Y:165 [GLU] 0:1292 [G] 4.7 58.26
Y:165 [GLU] 0:1328 [A] 3.15 58.26
Y:166 [ALA] 0:907 [A] 4.21 0:1298 [U] 54.98
Y:166 [ALA] 0:908 [A] 2.98 0:1297 [U] 54.98
Y:166 [ALA] 0:1268 [C] 2.73 0:1290 [G] sugar:BB 54.98
Y:166 [ALA] 0:1269 [G] 3.49 0:1289 [C] 54.98
Y:166 [ALA] 0:1328 [A] 3.39 54.98
Y:167 [GLY] 0:1089 [G] 3.08 0:1267 [C] base:BB 99.0
Y:167 [GLY] 0:1090 [A] 3.22 0:1266 [U] 99.0
Y:167 [GLY] 0:1267 [C] 4.94 0:1089 [G] 99.0
Y:167 [GLY] 0:1268 [C] 3.49 0:1290 [G] 99.0
Y:167 [GLY] 0:1269 [G] 4.83 0:1289 [C] 99.0
Y:167 [GLY] 0:1290 [G] 4.41 0:1268 [C] 99.0
Y:168 [PHE] 0:1089 [G] 4.68 0:1267 [C] 79.39
Y:168 [PHE] 0:1090 [A] 3.52 0:1266 [U] 79.39
Y:168 [PHE] 0:1091 [U] 4.76 0:1265 [G] 79.39
Y:168 [PHE] 0:1328 [A] 3.48 79.39
Y:169 [ARG] 0:1267 [C] 4.47 0:1089 [G] 76.6
Y:169 [ARG] 0:1268 [C] 2.96 0:1290 [G] 76.6
Y:169 [ARG] 0:1269 [G] 4.4 0:1289 [C] 76.6
Y:169 [ARG] 0:1327 [G] 3.35 0:1330 [A] 76.6
Y:169 [ARG] 0:1328 [A] 2.77 base/AA stacks 76.6
Y:169 [ARG] 0:1329 [A] 3.95 76.6
Y:170 [SER] 0:1267 [C] 4.31 0:1089 [G] 73.65
Y:170 [SER] 0:1268 [C] 3.38 0:1290 [G] 73.65
Y:170 [SER] 0:1327 [G] 3.84 0:1330 [A] 73.65
Y:170 [SER] 0:1328 [A] 2.82 73.65
Y:171 [PRO] 0:1267 [C] 3.28 0:1089 [G] 85.33
Y:171 [PRO] 0:1268 [C] 3.65 0:1290 [G] 85.33
Y:172 [THR] 0:1267 [C] 4.47 0:1089 [G] 41.94
Y:172 [THR] 0:1268 [C] 2.98 0:1290 [G] 41.94
Y:172 [THR] 0:1269 [G] 3.96 0:1289 [C] 41.94
Y:173 [ALA] 0:1268 [C] 4.75 0:1290 [G] 5.01
Y:174 [VAL] 0:1327 [G] 4.21 0:1330 [A] 68.25
Y:175 [ARG] 0:1268 [C] 3.09 0:1290 [G] 92.32
Y:175 [ARG] 0:1269 [G] 3.46 0:1289 [C] 92.32
Y:175 [ARG] 0:1326 [U] 4.86 0:1331 [A] 92.32
Y:175 [ARG] 0:1327 [G] 3.56 0:1330 [A] 92.32
Y:175 [ARG] 0:1328 [A] 3.56 92.32
Y:176 [GLY] 0:1326 [U] 3.46 0:1331 [A] 79.53
Y:176 [GLY] 0:1327 [G] 2.77 0:1330 [A] 79.53
Y:177 [LYS] 0:1326 [U] 3.58 0:1331 [A] 67.13
Y:177 [LYS] 0:1327 [G] 4.34 0:1330 [A] 67.13
Y:178 [HIS] 0:553 [G] 2.88 0:606 [C] 83.96
Y:178 [HIS] 0:554 [G] 3.25 0:605 [C] 83.96
Y:178 [HIS] 0:1325 [G] 4.05 0:1332 [C] 83.96
Y:178 [HIS] 0:1326 [U] 4.59 0:1331 [A] 83.96
Y:179 [PRO] 0:553 [G] 2.93 0:606 [C] 70.76
Y:179 [PRO] 0:554 [G] 4.59 0:605 [C] 70.76
Y:179 [PRO] 0:555 [U] 4.39 0:602 [A] 70.76
Y:179 [PRO] 0:1325 [G] 3.46 0:1332 [C] 70.76
Y:179 [PRO] 0:1326 [U] 4.19 0:1331 [A] 70.76
Y:180 [SER] 0:554 [G] 3.65 0:605 [C] 80.27
Y:180 [SER] 0:555 [U] 4.49 0:602 [A] 80.27
Y:184 [GLU] 0:553 [G] 4.51 0:606 [C] 64.06
Y:184 [GLU] 0:1325 [G] 4.45 0:1332 [C] 64.06
Y:186 [ARG] 0:1333 [U] 3.47 0:1324 [G] 42.43
Y:186 [ARG] 0:1334 [C] 3.0 0:1323 [G] 42.43
Y:188 [HIS] 0:1311 [G] 3.52 0:1343 [C] 49.92
Y:188 [HIS] 0:1312 [G] 3.28 0:1342 [C] 49.92
Y:189 [ASN] 0:1311 [G] 3.34 0:1343 [C] 81.53
Y:189 [ASN] 0:1312 [G] 3.83 0:1342 [C] 81.53
Y:204 [ARG] 0:552 [A] 2.89 79.56
Y:204 [ARG] 0:553 [G] 2.54 0:606 [C] 79.56
Y:204 [ARG] 0:1324 [G] 3.28 0:1333 [U] 79.56
Y:204 [ARG] 0:1333 [U] 3.6 0:1324 [G] 79.56
Y:204 [ARG] 0:1334 [C] 3.35 0:1323 [G] sugar:SC 79.56
Y:205 [ILE] 0:1334 [C] 3.78 0:1323 [G] 87.57
Y:205 [ILE] 0:1335 [C] 4.66 0:1322 [G] 87.57
Y:206 [ALA] 0:1334 [C] 3.31 0:1323 [G] 72.66
Y:207 [SER] 0:1317 [A] 4.15 0:1340 [G] 64.86
Y:207 [SER] 0:1333 [U] 4.94 0:1324 [G] 64.86
Y:207 [SER] 0:1334 [C] 2.83 0:1323 [G] 64.86
Y:207 [SER] 0:1335 [C] 2.73 0:1322 [G] 64.86
Y:208 [LYS] 0:1311 [G] 4.2 0:1343 [C] 52.82
Y:208 [LYS] 0:1312 [G] 2.77 0:1342 [C] 52.82
Y:208 [LYS] 0:1313 [A] 2.98 52.82
Y:208 [LYS] 0:1317 [A] 3.59 0:1340 [G] 52.82
Y:208 [LYS] 0:1318 [A] 3.77 0:1339 [G] 52.82
Y:208 [LYS] 0:1334 [C] 4.53 0:1323 [G] 52.82
Y:208 [LYS] 0:1343 [C] 2.65 0:1311 [G] base:SC, sugar:SC 52.82
Y:208 [LYS] 0:1344 [G] 3.8 0:1310 [U] 52.82
Y:209 [VAL] 0:1312 [G] 3.56 0:1342 [C] 88.31
Y:209 [VAL] 0:1313 [A] 3.85 88.31
Y:210 [GLY] 0:1312 [G] 4.28 0:1342 [C] 98.23
Y:210 [GLY] 0:1313 [A] 2.85 98.23
Y:210 [GLY] 0:1314 [U] 3.97 0:316 [A] 98.23
Y:210 [GLY] 0:1315 [G] 4.18 98.23
Y:210 [GLY] 0:1316 [G] 3.94 0:1341 [A] 98.23
Y:211 [ALA] 0:1314 [U] 4.82 0:316 [A] 40.36
Y:211 [ALA] 0:1315 [G] 3.47 40.36
Y:211 [ALA] 0:1316 [G] 3.22 0:1341 [A] 40.36
Y:212 [ARG] 0:319 [A] 4.68 0:312 [U] 79.89
Y:212 [ARG] 0:320 [G] 3.44 0:311 [C] 79.89
Y:212 [ARG] 0:1314 [U] 4.64 0:316 [A] 79.89
Y:212 [ARG] 0:1315 [G] 3.08 base:SC, sugar:BB 79.89
Y:213 [LYS] 0:1312 [G] 2.67 0:1342 [C] 91.43
Y:213 [LYS] 0:1313 [A] 2.74 91.43
Y:214 [ARG] 0:1335 [C] 4.02 0:1322 [G] 82.98
Y:215 [GLU] 0:1315 [G] 3.44 32.25
Y:216 [ARG] 0:320 [G] 4.51 0:311 [C] 17.39
Y:227 [ARG] 0:554 [G] 3.56 0:605 [C] 51.9
Y:229 [LEU] 0:552 [A] 3.36 68.1
Y:229 [LEU] 0:553 [G] 4.3 0:606 [C] 68.1
Y:230 [ASN] 0:552 [A] 4.02 98.89
Y:230 [ASN] 0:1334 [C] 2.88 0:1323 [G] 98.89
Y:230 [ASN] 0:1335 [C] 3.13 0:1322 [G] 98.89
Y:231 [PRO] 0:552 [A] 3.69 46.43
Y:233 [TYR] 0:551 [A] 3.39 3.88
Y:233 [TYR] 0:552 [A] 2.65 3.88

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group58 1VQ8_Y_0 Y: 50s ribosomal protein l32e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P12736 Ribosomal protein L32e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_Y_0 1YHQ_Y_0 0.99 1.0 0.15 0.95 Ribosomal protein L32e Archaeal large subunit ribosomal RNA compare
1VQ8_Y_0 7O7Y_Be_B5 0.70 0.93 1.76 0.26 Ribosomal protein L32e compare
1VQ8_Y_0 6AZ3_f_1 0.68 0.77 1.52 0.3 Ribosomal protein L32e compare