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All interfaces > All interologs > Interface groups > group58 > 6AZ3_f_1

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_f
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
f:3 [LYS] 1:482 [U] 4.06 1:652 [A] 28.77
f:5 [THR] 1:638 [C] 4.5 1:1435 [G] 31.04
f:6 [VAL] 1:638 [C] 3.26 1:1435 [G] 23.63
f:6 [VAL] 1:639 [A] 3.33 23.63
f:7 [SER] 1:638 [C] 3.99 1:1435 [G] 30.99
f:7 [SER] 1:639 [A] 4.08 30.99
f:8 [LYS] 1:639 [A] 4.95 31.33
f:12 [LYS] 1:1494 [C] 2.66 1:1499 [G] 68.48
f:12 [LYS] 1:1495 [G] 3.71 1:1498 [A] 68.48
f:13 [LYS] 1:1218 [A] 4.77 1:1408 [U] 74.53
f:13 [LYS] 1:1219 [G] 3.9 1:1407 [C] 74.53
f:13 [LYS] 1:1408 [U] 2.79 1:1218 [A] base:SC 74.53
f:13 [LYS] 1:1409 [U] 3.3 1:1456 [A] sugar:SC 74.53
f:14 [ARG] 1:468 [G] 4.94 1:665 [C] 68.94
f:14 [ARG] 1:469 [A] 3.46 1:664 [C] 68.94
f:15 [THR] 1:657 [G] 3.57 1:476 [U] 65.46
f:15 [THR] 1:658 [G] 4.45 1:475 [C] 65.46
f:16 [LYS] 1:468 [G] 4.7 1:665 [C] 85.88
f:16 [LYS] 1:469 [A] 3.0 1:664 [C] 85.88
f:17 [ARG] 1:1493 [G] 4.65 1:1500 [C] 27.98
f:17 [ARG] 1:1494 [C] 3.82 1:1499 [G] 27.98
f:17 [ARG] 1:1495 [G] 3.54 1:1498 [A] 27.98
f:17 [ARG] 1:1497 [G] 4.65 27.98
f:17 [ARG] 1:1499 [G] 4.18 1:1494 [C] 27.98
f:18 [PHE] 1:1496 [U] 3.2 93.09
f:18 [PHE] 1:1497 [G] 3.68 93.09
f:18 [PHE] 1:1498 [A] 4.57 1:1495 [G] 93.09
f:19 [THR] 1:468 [G] 4.87 1:665 [C] 27.11
f:20 [ARG] 1:1525 [A] 2.81 base:SC 98.52
f:21 [HIS] 1:670 [C] 3.25 1:683 [G] 49.1
f:21 [HIS] 1:1525 [A] 4.16 49.1
f:22 [ARG] 1:669 [C] 3.85 1:684 [G] 50.83
f:22 [ARG] 1:670 [C] 2.89 1:683 [G] 50.83
f:22 [ARG] 1:684 [G] 4.15 1:669 [C] 50.83
f:22 [ARG] 1:1525 [A] 3.89 base:SC 50.83
f:22 [ARG] 1:1526 [OMG] 4.49 50.83
f:24 [GLU] 1:466 [U] 3.56 38.85
f:24 [GLU] 1:467 [G] 3.35 1:666 [C] 38.85
f:24 [GLU] 1:468 [G] 4.94 1:665 [C] 38.85
f:25 [LEU] 1:465 [A] 4.34 46.58
f:25 [LEU] 1:466 [U] 3.72 46.58
f:26 [PHE] 1:686 [C] 3.73 1:1533 [G] 0.0
f:26 [PHE] 1:687 [C] 3.72 1:1532 [G] 0.0
f:26 [PHE] 1:1525 [A] 3.29 base/AA stacks 0.0
f:27 [PRO] 1:450 [G] 3.69 7:13 [U] 53.05
f:27 [PRO] 1:686 [C] 3.65 1:1533 [G] 53.05
f:27 [PRO] 1:687 [C] 3.14 1:1532 [G] 53.05
f:27 [PRO] 1:688 [A] 4.94 1:1531 [U] 53.05
f:28 [GLN] 1:686 [C] 4.88 1:1533 [G] 77.32
f:28 [GLN] 1:687 [C] 2.7 1:1532 [G] 77.32
f:28 [GLN] 1:688 [A] 3.08 1:1531 [U] 77.32
f:28 [GLN] 1:1525 [A] 3.25 77.32
f:28 [GLN] 1:1526 [OMG] 4.86 77.32
f:29 [LEU] 1:687 [C] 4.98 1:1532 [G] 61.03
f:29 [LEU] 1:1525 [A] 3.48 61.03
f:31 [SER] 1:1498 [A] 4.86 1:1495 [G] 0.31
f:32 [SER] 1:1498 [A] 3.57 1:1495 [G] 70.5
f:32 [SER] 1:1499 [G] 3.38 1:1494 [C] 70.5
f:33 [TRP] 1:995 [C] 4.87 1:1467 [G] 88.7
f:33 [TRP] 1:996 [A] 3.59 1:1465 [U] 88.7
f:33 [TRP] 1:997 [C] 3.05 1:1464 [G] 88.7
f:33 [TRP] 1:1497 [G] 3.52 88.7
f:33 [TRP] 1:1498 [A] 3.12 1:1495 [G] 88.7
f:34 [ARG] 1:995 [C] 3.01 1:1467 [G] 98.23
f:34 [ARG] 1:996 [A] 3.71 1:1465 [U] 98.23
f:34 [ARG] 1:1498 [A] 3.26 1:1495 [G] 98.23
f:34 [ARG] 1:1499 [G] 3.06 1:1494 [C] 98.23
f:35 [LYS] 1:995 [C] 4.9 1:1467 [G] 66.69
f:35 [LYS] 1:996 [A] 2.85 1:1465 [U] 66.69
f:35 [LYS] 1:997 [C] 3.3 1:1464 [G] 66.69
f:35 [LYS] 1:1458 [G] 4.78 66.69
f:35 [LYS] 1:1459 [U] 4.96 1:1002 [A] 66.69
f:36 [PRO] 1:671 [G] 4.98 1:682 [C] 97.38
f:37 [ARG] 1:672 [U] 3.88 1:681 [A2M] 78.05
f:37 [ARG] 1:996 [A] 3.63 1:1465 [U] 78.05
f:37 [ARG] 1:1460 [A] 4.55 1:1001 [G] 78.05
f:38 [GLY] 1:671 [G] 3.33 1:682 [C] 98.32
f:38 [GLY] 1:672 [U] 3.35 1:681 [A2M] 98.32
f:39 [GLU] 1:672 [U] 3.01 1:681 [A2M] 54.21
f:39 [GLU] 1:673 [C] 2.72 54.21
f:39 [GLU] 1:674 [U] 3.52 2:618 [A] base/AA stacks 54.21
f:39 [GLU] 1:1200 [A] 4.99 1:1003 [A] 54.21
f:40 [ASP] 1:671 [G] 3.77 1:682 [C] 81.97
f:40 [ASP] 1:672 [U] 3.46 1:681 [A2M] 81.97
f:40 [ASP] 1:673 [C] 4.81 81.97
f:40 [ASP] 1:674 [U] 4.62 2:618 [A] 81.97
f:40 [ASP] 1:677 [A] 2.96 81.97
f:40 [ASP] 1:678 [A2M] 3.35 81.97
f:41 [SER] 1:670 [C] 4.74 1:683 [G] 80.24
f:41 [SER] 1:671 [G] 3.32 1:682 [C] 80.24
f:42 [PRO] 1:670 [C] 3.36 1:683 [G] 78.14
f:42 [PRO] 1:671 [G] 4.96 1:682 [C] 78.14
f:44 [ARG] 1:1200 [A] 4.66 1:1003 [A] 97.65
f:44 [ARG] 1:1201 [U] 2.81 1:1217 [U] 97.65
f:44 [ARG] 1:1458 [G] 4.66 97.65
f:44 [ARG] 1:1459 [U] 3.71 1:1002 [A] 97.65
f:45 [ARG] 1:677 [A] 4.91 58.66
f:45 [ARG] 1:678 [A2M] 4.14 58.66
f:45 [ARG] 1:1201 [U] 4.14 1:1217 [U] 58.66
f:45 [ARG] 1:1202 [G] 3.14 1:1215 [C] 58.66
f:46 [ARG] 1:1201 [U] 3.22 1:1217 [U] sugar:SC 49.15
f:46 [ARG] 1:1202 [G] 2.39 1:1215 [C] sugar:BB 49.15
f:46 [ARG] 1:1203 [C] 4.36 1:1214 [G] 49.15
f:46 [ARG] 1:1217 [U] 3.75 1:1201 [U] base:SC 49.15
f:46 [ARG] 1:1401 [U] 3.81 49.15
f:46 [ARG] 1:1457 [U] 2.96 base:SC 49.15
f:46 [ARG] 1:1458 [G] 4.21 49.15
f:47 [TYR] 1:1202 [G] 3.54 1:1215 [C] 52.04
f:47 [TYR] 1:1203 [C] 3.5 1:1214 [G] 52.04
f:47 [TYR] 1:1401 [U] 4.39 52.04
f:48 [LYS] 1:666 [C] 3.48 1:467 [G] 75.33
f:48 [LYS] 1:667 [A] 3.85 75.33
f:48 [LYS] 1:1202 [G] 4.53 1:1215 [C] 75.33
f:48 [LYS] 1:1203 [C] 3.02 1:1214 [G] 75.33
f:48 [LYS] 1:1204 [G] 3.27 1:1213 [C] 75.33
f:49 [GLY] 1:467 [G] 3.35 1:666 [C] base:BB 78.94
f:49 [GLY] 1:468 [G] 3.48 1:665 [C] 78.94
f:49 [GLY] 1:666 [C] 3.96 1:467 [G] 78.94
f:49 [GLY] 1:667 [A] 3.5 78.94
f:50 [GLN] 1:468 [G] 3.67 1:665 [C] 32.05
f:50 [GLN] 1:667 [A] 3.34 sugar:SC 32.05
f:51 [LYS] 1:467 [G] 3.53 1:666 [C] 37.72
f:51 [LYS] 1:468 [G] 3.72 1:665 [C] 37.72
f:54 [PRO] 1:997 [C] 3.97 1:1464 [G] 88.75
f:54 [PRO] 1:998 [A] 4.29 1:1463 [U] 88.75
f:54 [PRO] 1:1496 [U] 3.34 88.75
f:54 [PRO] 1:1497 [G] 3.55 88.75
f:55 [ASN] 1:997 [C] 4.32 1:1464 [G] 57.78
f:55 [ASN] 1:998 [A] 2.76 1:1463 [U] 57.78
f:55 [ASN] 1:1218 [A] 3.05 1:1408 [U] 57.78
f:55 [ASN] 1:1219 [G] 3.92 1:1407 [C] 57.78
f:55 [ASN] 1:1496 [U] 3.01 sugar:BB 57.78
f:56 [LYS] 1:997 [C] 4.34 1:1464 [G] 55.63
f:56 [LYS] 1:998 [A] 3.35 1:1463 [U] 55.63
f:56 [LYS] 1:999 [U] 3.39 1:1462 [A] 55.63
f:56 [LYS] 1:1218 [A] 3.63 1:1408 [U] 55.63
f:56 [LYS] 1:1409 [U] 2.4 1:1456 [A] sugar:BB 55.63
f:56 [LYS] 1:1410 [U] 3.72 1:1455 [G] 55.63
f:56 [LYS] 1:1456 [A] 4.1 1:1409 [U] 55.63
f:56 [LYS] 1:1457 [U] 4.2 55.63
f:56 [LYS] 1:1496 [U] 3.99 55.63
f:57 [GLY] 1:1218 [A] 3.17 1:1408 [U] sugar:BB 98.37
f:57 [GLY] 1:1219 [G] 3.1 1:1407 [C] 98.37
f:57 [GLY] 1:1408 [U] 4.44 1:1218 [A] 98.37
f:57 [GLY] 1:1409 [U] 3.8 1:1456 [A] 98.37
f:58 [TYR] 1:1218 [A] 4.94 1:1408 [U] 84.26
f:58 [TYR] 1:1219 [G] 3.53 1:1407 [C] 84.26
f:58 [TYR] 1:1220 [G] 3.83 1:1406 [C] 84.26
f:58 [TYR] 1:1409 [U] 4.9 1:1456 [A] 84.26
f:58 [TYR] 1:1496 [U] 3.57 84.26
f:59 [GLY] 1:1408 [U] 4.04 1:1218 [A] 66.8
f:59 [GLY] 1:1409 [U] 3.42 1:1456 [A] 66.8
f:59 [GLY] 1:1496 [U] 3.41 66.8
f:60 [SER] 1:1408 [U] 4.5 1:1218 [A] 75.67
f:60 [SER] 1:1409 [U] 3.23 1:1456 [A] 75.67
f:60 [SER] 1:1495 [G] 3.8 1:1498 [A] 75.67
f:60 [SER] 1:1496 [U] 2.77 75.67
f:61 [ASP] 1:1408 [U] 2.88 1:1218 [A] 66.86
f:61 [ASP] 1:1409 [U] 3.82 1:1456 [A] 66.86
f:62 [ARG] 1:1408 [U] 4.33 1:1218 [A] 50.53
f:62 [ARG] 1:1409 [U] 3.13 1:1456 [A] 50.53
f:62 [ARG] 1:1410 [U] 2.75 1:1455 [G] 50.53
f:62 [ARG] 1:1446 [A] 2.92 50.53
f:62 [ARG] 1:1447 [G] 3.44 sugar:SC base/AA stacks 50.53
f:63 [ALA] 1:1409 [U] 4.69 1:1456 [A] 45.96
f:64 [THR] 1:1495 [G] 4.15 1:1498 [A] 73.92
f:65 [LYS] 1:1410 [U] 4.51 1:1455 [G] 80.81
f:65 [LYS] 1:1446 [A] 4.61 80.81
f:65 [LYS] 1:1494 [C] 4.96 1:1499 [G] 80.81
f:65 [LYS] 1:1495 [G] 3.26 1:1498 [A] 80.81
f:65 [LYS] 1:1496 [U] 3.53 80.81
f:66 [TYR] 1:1446 [A] 3.06 base/AA stacks 69.3
f:66 [TYR] 1:1494 [C] 3.41 1:1499 [G] 69.3
f:66 [TYR] 1:1495 [G] 2.43 1:1498 [A] 69.3
f:67 [ILE] 1:1493 [G] 5.0 1:1500 [C] 52.76
f:67 [ILE] 1:1494 [C] 3.26 1:1499 [G] 52.76
f:67 [ILE] 1:1495 [G] 4.2 1:1498 [A] 52.76
f:68 [THR] 1:1493 [G] 3.55 1:1500 [C] 76.78
f:68 [THR] 1:1494 [C] 3.77 1:1499 [G] 76.78
f:69 [PRO] 1:479 [A] 4.44 1:655 [U] 72.99
f:69 [PRO] 1:480 [U] 3.01 1:654 [A] 72.99
f:69 [PRO] 1:1493 [G] 3.19 1:1500 [C] 72.99
f:69 [PRO] 1:1494 [C] 4.26 1:1499 [G] 72.99
f:70 [SER] 1:480 [U] 3.24 1:654 [A] 82.01
f:70 [SER] 1:481 [U] 3.83 1:653 [A] 82.01
f:73 [ARG] 1:1446 [A] 4.31 4.05
f:74 [SER] 1:1446 [A] 4.84 65.1
f:78 [ASN] 1:1478 [A] 3.27 1:1512 [C] 28.34
f:78 [ASN] 1:1479 [G] 3.59 1:1511 [C] 28.34
f:78 [ASN] 1:1513 [G] 4.53 1:1477 [U] 28.34
f:79 [ASN] 1:1478 [A] 2.89 1:1512 [C] 88.36
f:79 [ASN] 1:1479 [G] 3.34 1:1511 [C] 88.36
f:80 [VAL] 1:202 [G] 4.61 1:214 [C] 51.81
f:80 [VAL] 1:203 [C] 3.85 1:213 [G] 51.81
f:81 [GLU] 1:204 [A] 3.64 1:212 [U] 38.63
f:81 [GLU] 1:205 [A] 4.6 38.63
f:84 [TYR] 1:203 [C] 3.51 1:213 [G] 47.92
f:84 [TYR] 1:204 [A] 2.39 1:212 [U] 47.92
f:84 [TYR] 1:205 [A] 3.37 base/AA stacks 47.92
f:87 [VAL] 1:205 [A] 3.84 45.28
f:88 [MET] 1:1437 [A] 4.48 1:636 [U] 65.97
f:88 [MET] 1:1438 [G] 4.06 1:635 [C] 65.97
f:89 [GLN] 1:1437 [A] 4.33 1:636 [U] 30.89
f:89 [GLN] 1:1438 [G] 3.39 1:635 [C] 30.89
f:91 [ARG] 1:1436 [G] 3.18 1:637 [C] sugar:SC 6.92
f:96 [VAL] 1:1501 [C] 4.01 1:1492 [G] 64.42
f:96 [VAL] 1:1502 [U] 3.67 1:1491 [U] 64.42
f:97 [ILE] 1:1502 [U] 3.64 1:1491 [U] 87.83
f:97 [ILE] 1:1503 [A] 4.16 1:1489 [U] 87.83
f:98 [SER] 1:1502 [U] 3.22 1:1491 [U] 67.86
f:98 [SER] 1:1503 [A] 4.46 1:1489 [U] 67.86
f:99 [HIS] 1:1484 [A] 4.56 1:1509 [G] 58.27
f:99 [HIS] 1:1485 [A] 4.96 1:1508 [G] 58.27
f:99 [HIS] 1:1502 [U] 2.77 1:1491 [U] 58.27
f:99 [HIS] 1:1503 [A] 2.85 1:1489 [U] 58.27
f:99 [HIS] 1:1504 [A] 4.98 1:1488 [U] 58.27
f:100 [THR] 1:1479 [G] 2.67 1:1511 [C] sugar:SC 64.39
f:100 [THR] 1:1480 [G] 3.24 64.39
f:100 [THR] 1:1484 [A] 3.64 1:1509 [G] 64.39
f:100 [THR] 1:1485 [A] 3.5 1:1508 [G] 64.39
f:100 [THR] 1:1502 [U] 4.96 1:1491 [U] 64.39
f:101 [VAL] 1:1479 [G] 3.51 1:1511 [C] 87.93
f:101 [VAL] 1:1480 [G] 4.13 87.93
f:101 [VAL] 1:1483 [G] 4.59 1:1510 [A] 87.93
f:102 [GLY] 1:1479 [G] 3.74 1:1511 [C] 95.91
f:102 [GLY] 1:1480 [G] 3.07 95.91
f:102 [GLY] 1:1481 [A] 4.13 95.91
f:102 [GLY] 1:1482 [C] 4.13 95.91
f:102 [GLY] 1:1483 [G] 3.26 1:1510 [A] 95.91
f:103 [ALA] 1:1481 [A] 4.75 35.55
f:103 [ALA] 1:1482 [C] 3.3 35.55
f:103 [ALA] 1:1483 [G] 2.76 1:1510 [A] 35.55
f:104 [ARG] 1:201 [A] 3.58 1:215 [U] 65.5
f:104 [ARG] 1:202 [G] 4.07 1:214 [C] 65.5
f:104 [ARG] 1:1480 [G] 4.66 65.5
f:104 [ARG] 1:1481 [A] 3.33 65.5
f:104 [ARG] 1:1482 [C] 3.08 sugar:BB 65.5
f:105 [LYS] 1:1480 [G] 3.48 84.12
f:106 [ARG] 1:1502 [U] 4.91 1:1491 [U] 85.54
f:106 [ARG] 1:1503 [A] 2.82 1:1489 [U] 85.54
f:107 [LYS] 1:198 [C] 3.52 23.06
f:107 [LYS] 1:199 [A] 3.68 23.06
f:107 [LYS] 1:217 [A] 4.54 23.06
f:107 [LYS] 1:218 [A] 3.04 base:SC 23.06
f:107 [LYS] 1:1482 [C] 4.11 23.06
f:108 [ALA] 1:202 [G] 3.54 1:214 [C] 24.41
f:108 [ALA] 1:203 [C] 4.96 1:213 [G] 24.41
f:111 [ARG] 1:202 [G] 3.11 1:214 [C] sugar:SC 53.35
f:111 [ARG] 1:216 [G] 4.42 53.35
f:111 [ARG] 1:217 [A] 2.49 53.35
f:112 [LYS] 1:203 [C] 3.28 1:213 [G] sugar:SC 63.21
f:112 [LYS] 1:204 [A] 4.39 1:212 [U] 63.21
f:115 [GLU] 1:203 [C] 4.71 1:213 [G] 58.32
f:116 [LEU] 1:205 [A] 3.57 45.14
f:119 [ARG] 1:480 [U] 4.92 1:654 [A] 41.15
f:119 [ARG] 1:481 [U] 2.91 1:653 [A] 41.15
f:121 [ALA] 1:480 [U] 3.78 1:654 [A] 58.76
f:122 [ASN] 1:1502 [U] 2.61 1:1491 [U] 99.0
f:122 [ASN] 1:1503 [A] 3.59 1:1489 [U] 99.0
f:127 [LEU] 1:217 [A] 3.37 37.51

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group58 6AZ3_f_1 f: 60s_ribosomal_protein_l32/genedb:lmjf.21.1720, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A504XZK6 Ribosomal protein L32e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_Y_0 6AZ3_f_1 0.68 0.77 1.52 0.3 Ribosomal protein L32e compare
1YHQ_Y_0 6AZ3_f_1 0.68 0.78 1.54 0.33 Ribosomal protein L32e compare
6AZ3_f_1 7O7Y_Be_B5 0.78 0.92 1.04 0.38 Ribosomal protein L32e Eukaryotic large subunit ribosomal RNA compare