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All interfaces > All interologs > Interface groups > group58 > 7O7Y_Be_B5

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Be
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Be:2 [ALA] B5:454 [U] 4.99 B5:696 [U] 0.0
Be:5 [ARG] B5:454 [U] 3.29 B5:696 [U] sugar:SC 0.0
Be:5 [ARG] B5:697 [G] 3.53 0.0
Be:5 [ARG] B5:699 [G] 2.93 B5:1236 [C] 0.0
Be:6 [PRO] B5:696 [U] 4.3 B5:454 [U] 0.0
Be:7 [LEU] B5:696 [U] 3.01 B5:454 [U] sugar:BB 0.0
Be:8 [VAL] B5:696 [U] 4.07 B5:454 [U] 0.0
Be:8 [VAL] B5:697 [G] 4.09 0.0
Be:9 [LYS] B5:696 [U] 4.71 B5:454 [U] 0.0
Be:9 [LYS] B5:697 [G] 3.52 0.0
Be:10 [PRO] B5:697 [G] 4.75 0.0
Be:14 [LYS] B5:2160 [C] 3.37 B5:2165 [G] 0.0
Be:14 [LYS] B5:2161 [G] 2.65 B5:2164 [G] 0.0
Be:15 [LYS] B5:1838 [G] 3.37 B5:2016 [C] base:SC 0.0
Be:15 [LYS] B5:1839 [C] 3.68 B5:2015 [G] 0.0
Be:15 [LYS] B5:2015 [G] 4.42 B5:1839 [C] 0.0
Be:15 [LYS] B5:2016 [C] 2.84 B5:1838 [G] base:SC, sugar:SC 0.0
Be:15 [LYS] B5:2017 [C] 3.1 B5:2121 [G] sugar:SC 0.0
Be:16 [ARG] B5:437 [G] 4.7 B5:1254 [C] 0.0
Be:16 [ARG] B5:438 [G] 2.82 B5:1253 [C] 0.0
Be:18 [LYS] B5:438 [G] 3.07 B5:1253 [C] 0.0
Be:18 [LYS] B5:439 [G] 3.08 B5:1252 [C] 0.0
Be:18 [LYS] B5:1247 [A] 4.6 0.0
Be:18 [LYS] B5:2163 [G] 4.89 0.0
Be:19 [LYS] B5:1247 [A] 4.49 0.0
Be:19 [LYS] B5:2160 [C] 4.72 B5:2165 [G] 0.0
Be:19 [LYS] B5:2161 [G] 3.1 B5:2164 [G] base:SC 0.0
Be:19 [LYS] B5:2163 [G] 4.77 0.0
Be:19 [LYS] B5:2164 [G] 4.72 B5:2161 [G] 0.0
Be:19 [LYS] B5:2165 [G] 3.26 B5:2160 [C] base:SC 0.0
Be:20 [PHE] B5:2162 [C] 3.34 0.0
Be:20 [PHE] B5:2163 [G] 3.58 0.0
Be:20 [PHE] B5:2164 [G] 4.71 B5:2161 [G] 0.0
Be:21 [ILE] B5:436 [C] 4.15 B5:1255 [G] 0.0
Be:21 [ILE] B5:437 [G] 3.41 B5:1254 [C] 0.0
Be:22 [ARG] B5:1616 [C] 4.78 B5:2131 [G] 0.0
Be:22 [ARG] B5:2190 [A] 2.64 0.0
Be:23 [HIS] B5:1258 [C] 4.9 B5:1273 [G] 0.0
Be:23 [HIS] B5:1259 [C] 2.93 B5:1272 [G] 0.0
Be:23 [HIS] B5:2190 [A] 4.4 0.0
Be:24 [GLN] B5:1258 [C] 3.11 B5:1273 [G] 0.0
Be:24 [GLN] B5:1259 [C] 3.26 B5:1272 [G] 0.0
Be:24 [GLN] B5:2190 [A] 3.16 base:SC 0.0
Be:26 [ASP] B5:435 [A] 2.32 sugar:SC 0.0
Be:26 [ASP] B5:436 [C] 3.27 B5:1255 [G] 0.0
Be:27 [ARG] B5:434 [A] 3.13 base:SC 0.0
Be:27 [ARG] B5:435 [A] 4.26 0.0
Be:27 [ARG] B5:1258 [C] 4.07 B5:1273 [G] 0.0
Be:27 [ARG] B5:3597 [A] 4.84 B5:3613 [G] 0.0
Be:27 [ARG] B5:3598 [C] 3.59 B5:3612 [G] 0.0
Be:28 [TYR] B5:1273 [G] 3.94 B5:1258 [C] 0.0
Be:28 [TYR] B5:1275 [C] 3.66 B5:2198 [G] 0.0
Be:28 [TYR] B5:1276 [C] 4.0 B5:2197 [G] 0.0
Be:28 [TYR] B5:2190 [A] 3.51 0.0
Be:28 [TYR] B5:3597 [A] 3.26 B5:3613 [G] sugar:SC 0.0
Be:29 [VAL] B5:419 [A] 3.92 B8:15 [G] 0.0
Be:29 [VAL] B5:420 [A] 3.99 B8:14 [U] 0.0
Be:29 [VAL] B5:1276 [C] 3.42 B5:2197 [G] 0.0
Be:29 [VAL] B5:1277 [A] 4.48 B5:2196 [U] 0.0
Be:30 [LYS] B5:1273 [G] 4.93 B5:1258 [C] 0.0
Be:30 [LYS] B5:1275 [C] 4.87 B5:2198 [G] 0.0
Be:30 [LYS] B5:1276 [C] 2.92 B5:2197 [G] 0.0
Be:30 [LYS] B5:1277 [A] 3.53 B5:2196 [U] 0.0
Be:30 [LYS] B5:2190 [A] 3.19 0.0
Be:31 [ILE] B5:2190 [A] 3.33 0.0
Be:32 [LYS] B5:1277 [A] 4.88 B5:2196 [U] 0.0
Be:33 [ARG] B5:1247 [A] 3.11 sugar:SC base/AA stacks 0.0
Be:33 [ARG] B5:2164 [G] 4.77 B5:2161 [G] 0.0
Be:34 [ASN] B5:2164 [G] 3.6 B5:2161 [G] 0.0
Be:34 [ASN] B5:2165 [G] 2.95 B5:2160 [C] 0.0
Be:35 [TRP] B5:1616 [C] 4.68 B5:2131 [G] 0.0
Be:35 [TRP] B5:1617 [C] 3.43 B5:2130 [G] 0.0
Be:35 [TRP] B5:1618 [C] 2.74 B5:2129 [G] 0.0
Be:35 [TRP] B5:2163 [G] 3.3 0.0
Be:35 [TRP] B5:2164 [G] 2.76 B5:2161 [G] 0.0
Be:36 [ARG] B5:1616 [C] 2.94 B5:2131 [G] 0.0
Be:36 [ARG] B5:1617 [C] 3.45 B5:2130 [G] 0.0
Be:36 [ARG] B5:2164 [G] 3.26 B5:2161 [G] 0.0
Be:36 [ARG] B5:2165 [G] 2.78 B5:2160 [C] 0.0
Be:37 [LYS] B5:1617 [C] 2.71 B5:2130 [G] 0.0
Be:37 [LYS] B5:1618 [C] 3.51 B5:2129 [G] 0.0
Be:38 [PRO] B5:1260 [OMG] 4.83 B5:1271 [C] 0.0
Be:39 [ARG] B5:1260 [OMG] 4.75 B5:1271 [C] 0.0
Be:39 [ARG] B5:1261 [U] 3.86 B5:1270 [A2M] 0.0
Be:39 [ARG] B5:1616 [C] 4.38 B5:2131 [G] 0.0
Be:39 [ARG] B5:1617 [C] 2.56 B5:2130 [G] 0.0
Be:39 [ARG] B5:2124 [U] 5.0 B5:1623 [A] 0.0
Be:39 [ARG] B5:2125 [A] 4.49 B5:1622 [G] 0.0
Be:40 [GLY] B5:1260 [OMG] 3.17 B5:1271 [C] 0.0
Be:40 [GLY] B5:1261 [U] 3.17 B5:1270 [A2M] 0.0
Be:41 [ILE] B5:1260 [OMG] 4.91 B5:1271 [C] 0.0
Be:41 [ILE] B5:1261 [U] 3.11 B5:1270 [A2M] 0.0
Be:41 [ILE] B5:1262 [C] 3.81 B5:1266 [1MA] 0.0
Be:41 [ILE] B5:1263 [U] 3.47 B5:3608 [A] 0.0
Be:41 [ILE] B5:1820 [OMC] 4.68 B5:1624 [A] 0.0
Be:41 [ILE] B5:2124 [U] 4.96 B5:1623 [A] 0.0
Be:42 [ASP] B5:1260 [OMG] 4.03 B5:1271 [C] 0.0
Be:42 [ASP] B5:1261 [U] 3.02 B5:1270 [A2M] base:SC 0.0
Be:42 [ASP] B5:1262 [C] 4.62 B5:1266 [1MA] 0.0
Be:42 [ASP] B5:1263 [U] 4.31 B5:3608 [A] 0.0
Be:42 [ASP] B5:1266 [1MA] 3.1 B5:1262 [C] 0.0
Be:42 [ASP] B5:1267 [A] 3.49 0.0
Be:43 [ASN] B5:1259 [C] 3.7 B5:1272 [G] 0.0
Be:43 [ASN] B5:1260 [OMG] 2.85 B5:1271 [C] 0.0
Be:44 [ARG] B5:1256 [A] 3.17 sugar:SC 0.0
Be:44 [ARG] B5:1257 [C] 2.94 0.0
Be:44 [ARG] B5:1258 [C] 4.04 B5:1273 [G] 0.0
Be:44 [ARG] B5:1259 [C] 2.93 B5:1272 [G] 0.0
Be:46 [ARG] B5:1820 [OMC] 4.69 B5:1624 [A] 0.0
Be:46 [ARG] B5:1821 [U] 2.8 0.0
Be:46 [ARG] B5:2123 [G] 4.57 0.0
Be:46 [ARG] B5:2124 [U] 3.39 B5:1623 [A] 0.0
Be:47 [ARG] B5:1266 [1MA] 4.57 B5:1262 [C] 0.0
Be:47 [ARG] B5:1267 [A] 4.65 0.0
Be:47 [ARG] B5:1821 [U] 4.35 0.0
Be:47 [ARG] B5:1822 [G] 2.86 B5:2009 [U] sugar:BB 0.0
Be:48 [ARG] B5:1822 [G] 2.36 B5:2009 [U] sugar:BB 0.0
Be:48 [ARG] B5:1823 [C] 4.61 B5:1834 [G] 0.0
Be:48 [ARG] B5:1837 [C] 3.16 base:SC 0.0
Be:48 [ARG] B5:2122 [A] 2.65 sugar:SC 0.0
Be:48 [ARG] B5:2123 [G] 3.41 0.0
Be:49 [PHE] B5:1822 [G] 3.43 B5:2009 [U] 0.0
Be:49 [PHE] B5:1823 [C] 3.9 B5:1834 [G] 0.0
Be:50 [LYS] B5:1255 [G] 3.45 B5:436 [C] 0.0
Be:50 [LYS] B5:1256 [A] 3.52 0.0
Be:50 [LYS] B5:1822 [G] 3.98 B5:2009 [U] 0.0
Be:50 [LYS] B5:1823 [C] 3.05 B5:1834 [G] 0.0
Be:50 [LYS] B5:1824 [G] 2.67 B5:1833 [C] 0.0
Be:51 [GLY] B5:436 [C] 4.45 B5:1255 [G] 0.0
Be:51 [GLY] B5:437 [G] 3.35 B5:1254 [C] 0.0
Be:51 [GLY] B5:1255 [G] 2.99 B5:436 [C] base:BB 0.0
Be:51 [GLY] B5:1256 [A] 4.18 0.0
Be:52 [GLN] B5:437 [G] 3.03 B5:1254 [C] sugar:BB 0.0
Be:52 [GLN] B5:1256 [A] 3.02 sugar:SC 0.0
Be:53 [ILE] B5:436 [C] 3.9 B5:1255 [G] 0.0
Be:53 [ILE] B5:437 [G] 3.71 B5:1254 [C] 0.0
Be:54 [LEU] B5:437 [G] 4.11 B5:1254 [C] 0.0
Be:54 [LEU] B5:438 [G] 3.87 B5:1253 [C] 0.0
Be:56 [PRO] B5:1618 [C] 3.97 B5:2129 [G] 0.0
Be:56 [PRO] B5:1619 [U] 4.95 B5:2128 [A] 0.0
Be:56 [PRO] B5:2162 [C] 3.16 0.0
Be:56 [PRO] B5:2163 [G] 3.83 0.0
Be:57 [ASN] B5:1618 [C] 4.12 B5:2129 [G] 0.0
Be:57 [ASN] B5:1619 [U] 3.39 B5:2128 [A] 0.0
Be:57 [ASN] B5:1838 [G] 2.6 B5:2016 [C] sugar:SC 0.0
Be:57 [ASN] B5:1839 [C] 3.62 B5:2015 [G] 0.0
Be:57 [ASN] B5:2162 [C] 3.16 0.0
Be:58 [ILE] B5:1618 [C] 3.87 B5:2129 [G] 0.0
Be:58 [ILE] B5:1619 [U] 2.73 B5:2128 [A] 0.0
Be:58 [ILE] B5:1838 [G] 4.32 B5:2016 [C] 0.0
Be:58 [ILE] B5:2017 [C] 2.75 B5:2121 [G] sugar:BB 0.0
Be:58 [ILE] B5:2018 [G] 3.28 B5:2120 [C] 0.0
Be:58 [ILE] B5:2121 [G] 3.58 B5:2017 [C] 0.0
Be:58 [ILE] B5:2162 [C] 3.47 0.0
Be:59 [GLY] B5:1619 [U] 4.99 B5:2128 [A] 0.0
Be:59 [GLY] B5:1838 [G] 3.11 B5:2016 [C] base:BB, sugar:BB 0.0
Be:59 [GLY] B5:1839 [C] 3.07 B5:2015 [G] 0.0
Be:59 [GLY] B5:2016 [C] 4.66 B5:1838 [G] 0.0
Be:59 [GLY] B5:2017 [C] 3.96 B5:2121 [G] 0.0
Be:59 [GLY] B5:2121 [G] 4.79 B5:2017 [C] 0.0
Be:60 [TYR] B5:1838 [G] 4.99 B5:2016 [C] 0.0
Be:60 [TYR] B5:1839 [C] 3.51 B5:2015 [G] 0.0
Be:60 [TYR] B5:1840 [C] 4.62 B5:2014 [G] 0.0
Be:60 [TYR] B5:2162 [C] 3.34 0.0
Be:61 [GLY] B5:2016 [C] 3.8 B5:1838 [G] 0.0
Be:61 [GLY] B5:2017 [C] 3.45 B5:2121 [G] 0.0
Be:61 [GLY] B5:2162 [C] 3.38 0.0
Be:62 [SER] B5:2016 [C] 4.39 B5:1838 [G] 0.0
Be:62 [SER] B5:2017 [C] 3.14 B5:2121 [G] 0.0
Be:62 [SER] B5:2161 [G] 4.09 B5:2164 [G] 0.0
Be:62 [SER] B5:2162 [C] 2.35 0.0
Be:63 [ASN] B5:2016 [C] 3.6 B5:1838 [G] 0.0
Be:63 [ASN] B5:2017 [C] 3.41 B5:2121 [G] 0.0
Be:64 [LYS] B5:2016 [C] 4.51 B5:1838 [G] 0.0
Be:64 [LYS] B5:2017 [C] 2.85 B5:2121 [G] 0.0
Be:64 [LYS] B5:2018 [G] 2.8 B5:2120 [C] 0.0
Be:65 [LYS] B5:856 [A] 4.76 0.0
Be:65 [LYS] B5:857 [G] 2.64 0.0
Be:65 [LYS] B5:858 [G] 2.82 0.0
Be:65 [LYS] B5:2017 [C] 4.95 B5:2121 [G] 0.0
Be:66 [THR] B5:2161 [G] 3.86 B5:2164 [G] 0.0
Be:67 [LYS] B5:2160 [C] 4.81 B5:2165 [G] 0.0
Be:67 [LYS] B5:2161 [G] 3.5 B5:2164 [G] 0.0
Be:67 [LYS] B5:2162 [C] 3.88 0.0
Be:68 [HIS] B5:2160 [C] 3.04 B5:2165 [G] sugar:SC 0.0
Be:68 [HIS] B5:2161 [G] 2.92 B5:2164 [G] 0.0
Be:69 [MET] B5:2160 [C] 3.81 B5:2165 [G] 0.0
Be:69 [MET] B5:2161 [G] 4.29 B5:2164 [G] 0.0
Be:70 [LEU] B5:2159 [G] 3.31 B5:2166 [C] 0.0
Be:70 [LEU] B5:2160 [C] 3.88 B5:2165 [G] 0.0
Be:71 [PRO] B5:2159 [G] 3.53 B5:2166 [C] 0.0
Be:71 [PRO] B5:2160 [C] 3.9 B5:2165 [G] 0.0
Be:76 [LYS] B5:2158 [G] 3.97 B5:2167 [C] 0.0
Be:76 [LYS] B5:2159 [G] 4.75 B5:2166 [C] 0.0
Be:76 [LYS] B5:2167 [C] 3.19 B5:2158 [G] base:SC 0.0
Be:76 [LYS] B5:2168 [C] 4.5 B5:2157 [G] 0.0
Be:78 [LEU] B5:2167 [C] 3.76 B5:2158 [G] 0.0
Be:78 [LEU] B5:2168 [C] 4.05 B5:2157 [G] 0.0
Be:80 [HIS] B5:2144 [G] 3.85 B5:2177 [C] 0.0
Be:80 [HIS] B5:2145 [C] 3.74 B5:2176 [G] 0.0
Be:81 [ASN] B5:2144 [G] 3.14 B5:2177 [C] 0.0
Be:81 [ASN] B5:2145 [C] 3.59 B5:2176 [G] 0.0
Be:83 [LYS] B5:2143 [A] 3.72 0.0
Be:84 [GLU] B5:2142 [G] 4.42 B5:2178 [C] 0.0
Be:84 [GLU] B5:2144 [G] 4.86 B5:2177 [C] 0.0
Be:98 [GLU] B5:2158 [G] 4.91 B5:2167 [C] 0.0
Be:98 [GLU] B5:2167 [C] 2.25 B5:2158 [G] sugar:SC 0.0
Be:98 [GLU] B5:2168 [C] 2.73 B5:2157 [G] 0.0
Be:99 [ILE] B5:2168 [C] 3.33 B5:2157 [G] 0.0
Be:99 [ILE] B5:2169 [G] 4.77 B5:2155 [U] 0.0
Be:100 [ALA] B5:2168 [C] 3.39 B5:2157 [G] 0.0
Be:100 [ALA] B5:2169 [G] 4.63 B5:2155 [U] 0.0
Be:101 [HIS] B5:2150 [A] 4.62 B5:2174 [G] 0.0
Be:101 [HIS] B5:2151 [A] 2.88 B5:2173 [G] 0.0
Be:101 [HIS] B5:2167 [C] 4.83 B5:2158 [G] 0.0
Be:101 [HIS] B5:2168 [C] 2.68 B5:2157 [G] 0.0
Be:101 [HIS] B5:2169 [G] 3.19 B5:2155 [U] 0.0
Be:102 [ASN] B5:2145 [C] 3.14 B5:2176 [G] 0.0
Be:102 [ASN] B5:2146 [C] 3.18 0.0
Be:102 [ASN] B5:2150 [A] 3.85 B5:2174 [G] 0.0
Be:102 [ASN] B5:2151 [A] 4.72 B5:2173 [G] 0.0
Be:102 [ASN] B5:2168 [C] 4.8 B5:2157 [G] 0.0
Be:103 [VAL] B5:2145 [C] 3.82 B5:2176 [G] 0.0
Be:103 [VAL] B5:2146 [C] 3.72 0.0
Be:103 [VAL] B5:2149 [G] 4.77 B5:2175 [A] 0.0
Be:104 [SER] B5:2145 [C] 4.24 B5:2176 [G] 0.0
Be:104 [SER] B5:2146 [C] 2.75 0.0
Be:104 [SER] B5:2147 [U] 3.22 0.0
Be:104 [SER] B5:2148 [U] 3.43 sugar:SC 0.0
Be:104 [SER] B5:2149 [G] 3.52 B5:2175 [A] 0.0
Be:105 [SER] B5:2148 [U] 3.31 0.0
Be:105 [SER] B5:2149 [G] 2.99 B5:2175 [A] 0.0
Be:106 [LYS] B5:2148 [U] 3.24 sugar:BB 0.0
Be:107 [ASN] B5:2145 [C] 4.44 B5:2176 [G] 0.0
Be:107 [ASN] B5:2146 [C] 2.65 0.0
Be:108 [ARG] B5:2168 [C] 3.74 B5:2157 [G] 0.0
Be:108 [ARG] B5:2169 [G] 2.34 B5:2155 [U] 0.0
Be:123 [THR] B5:2168 [C] 4.98 B5:2157 [G] 0.0
Be:124 [ASN] B5:2168 [C] 2.83 B5:2157 [G] 0.0
Be:124 [ASN] B5:2169 [G] 3.71 B5:2155 [U] 0.0
Be:126 [ASN] B5:448 [G] 4.95 B5:1242 [C] 0.0
Be:126 [ASN] B5:449 [C] 3.27 sugar:SC base/AA stacks 0.0
Be:126 [ASN] B5:2170 [G] 4.72 B5:2154 [C] 0.0
Be:127 [ALA] B5:2169 [G] 3.53 B5:2155 [U] 0.0
Be:127 [ALA] B5:2170 [G] 3.64 B5:2154 [C] 0.0
Be:128 [ARG] B5:2149 [G] 2.88 B5:2175 [A] 0.0
Be:128 [ARG] B5:2150 [A] 2.99 B5:2174 [G] 0.0
Be:128 [ARG] B5:2169 [G] 4.56 B5:2155 [U] 0.0
Be:128 [ARG] B5:2170 [G] 2.83 B5:2154 [C] 0.0
Be:129 [LEU] B5:449 [C] 3.85 0.0
Be:129 [LEU] B5:2170 [G] 4.86 B5:2154 [C] 0.0
Be:130 [ARG] B5:206 [U] 4.84 0.0
Be:130 [ARG] B5:2148 [U] 2.97 base/AA stacks 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group58 7O7Y_Be_B5 Be: El32, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1U437 Ribosomal protein L32e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_f_1 7O7Y_Be_B5 0.78 0.92 1.04 0.38 Ribosomal protein L32e Eukaryotic large subunit ribosomal RNA compare
1YHQ_Y_0 7O7Y_Be_B5 0.70 0.93 1.78 0.26 Ribosomal protein L32e compare
1VQ8_Y_0 7O7Y_Be_B5 0.70 0.93 1.76 0.26 Ribosomal protein L32e compare