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All interfaces > All interologs > Interface groups > group59 > 2XLI_A_B

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2XLI_A
2XLI_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:29 [HIS] B:21 [C] 3.23 98.95
A:102 [ARG] B:6 [C] 4.65 B:20 [DG] 98.37
A:102 [ARG] B:19 [A] 3.59 B:7 [U] base/AA stacks 98.37
A:104 [GLN] B:8 [G] 4.79 B:18 [C] 90.24
A:104 [GLN] B:18 [C] 3.32 B:8 [G] base/AA stacks 90.24
A:104 [GLN] B:19 [A] 2.82 B:7 [U] base:SC, base:SC 90.24
A:110 [GLU] B:7 [U] 3.37 B:19 [A] 67.85
A:111 [ARG] B:7 [U] 4.26 B:19 [A] 85.72
A:111 [ARG] B:8 [G] 3.85 B:18 [C] 85.72
A:112 [LEU] B:14 [U] 4.25 67.7
A:114 [ARG] B:8 [G] 4.41 B:18 [C] 86.85
A:115 [ARG] B:8 [G] 4.97 B:18 [C] 91.66
A:115 [ARG] B:9 [C] 3.16 B:17 [G] base/AA stacks 91.66
A:115 [ARG] B:10 [C] 2.61 B:16 [G] 91.66
A:115 [ARG] B:11 [G] 2.54 B:15 [A] base:SC, base:SC 91.66
A:119 [ARG] B:10 [C] 3.72 B:16 [G] 85.93
A:119 [ARG] B:11 [G] 3.0 B:15 [A] base/AA stacks 85.93
A:119 [ARG] B:12 [U] 3.62 85.93
A:119 [ARG] B:13 [A] 2.55 85.93
A:147 [ARG] B:21 [C] 3.54 39.71
A:148 [SER] B:21 [C] 3.75 99.0
A:149 [GLN] B:21 [C] 2.85 31.36
A:150 [SER] B:21 [C] 4.24 95.56
A:153 [GLN] B:6 [C] 3.52 B:20 [DG] base:SC 77.54
A:153 [GLN] B:7 [U] 2.91 B:19 [A] 77.54
A:154 [HIS] B:6 [C] 4.25 B:20 [DG] 31.06
A:155 [PHE] B:6 [C] 3.3 B:20 [DG] 79.5
A:156 [ARG] B:6 [C] 4.6 B:20 [DG] 63.87
A:174 [THR] B:19 [A] 3.19 B:7 [U] 80.68
A:176 [TYR] B:21 [C] 4.23 94.63

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group59 2XLI_A_B A: Csy4 endoribonuclease, Pseudomonas aeruginosa (genetically engineered) B: Pseudomonas aeruginosa (synthetic) Q02MM2 CRISPR transcript (pre-crRNA) processing endoribonuclease-related ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2XLI_A_B 4AL5_A_B 0.60 0.97 0.81 0.95 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare
2XLI_A_B 2XLK_B_D 0.81 0.97 0.48 0.95 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare
2XLI_A_B 4AL7_A_B 0.43 0.97 0.73 0.69 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare