RNAprotDB

All interfaces > All interologs > Interface groups > group59 > 2XLK_B_D

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

2XLK_B
2XLK_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:29 [HIS] D:21 [C] 3.31 98.95
B:102 [ARG] D:6 [C] 4.19 D:20 [DG] 98.47
B:102 [ARG] D:18 [C] 4.48 D:8 [G] 98.47
B:102 [ARG] D:19 [A] 3.86 D:7 [U] 98.47
B:104 [GLN] D:6 [C] 4.63 D:20 [DG] 87.31
B:104 [GLN] D:7 [U] 4.82 D:19 [A] 87.31
B:104 [GLN] D:8 [G] 4.74 D:18 [C] 87.31
B:104 [GLN] D:18 [C] 3.24 D:8 [G] base/AA stacks 87.31
B:104 [GLN] D:19 [A] 2.84 D:7 [U] base:SC, base:SC 87.31
B:106 [LYS] D:11 [G] 4.53 D:15 [A] 83.13
B:106 [LYS] D:14 [U] 3.27 83.13
B:106 [LYS] D:16 [G] 3.1 D:10 [C] base:SC, base:SC 83.13
B:106 [LYS] D:17 [G] 4.08 D:9 [C] 83.13
B:108 [ASN] D:6 [C] 3.69 D:20 [DG] 77.35
B:108 [ASN] D:7 [U] 4.18 D:19 [A] 77.35
B:111 [ARG] D:6 [C] 2.9 D:20 [DG] 84.84
B:111 [ARG] D:7 [U] 2.79 D:19 [A] 84.84
B:111 [ARG] D:8 [G] 3.27 D:18 [C] 84.84
B:112 [LEU] D:14 [U] 4.98 66.68
B:114 [ARG] D:7 [U] 3.19 D:19 [A] 85.83
B:114 [ARG] D:8 [G] 2.78 D:18 [C] 85.83
B:115 [ARG] D:9 [C] 3.02 D:17 [G] base/AA stacks 92.13
B:115 [ARG] D:10 [C] 2.83 D:16 [G] base/AA stacks 92.13
B:115 [ARG] D:11 [G] 2.74 D:15 [A] base:SC, base:SC 92.13
B:116 [LEU] D:13 [A] 3.97 53.96
B:116 [LEU] D:14 [U] 4.45 53.96
B:118 [ARG] D:7 [U] 4.84 D:19 [A] 72.64
B:118 [ARG] D:8 [G] 2.54 D:18 [C] 72.64
B:118 [ARG] D:9 [C] 2.89 D:17 [G] 72.64
B:119 [ARG] D:10 [C] 4.41 D:16 [G] 87.47
B:119 [ARG] D:11 [G] 3.25 D:15 [A] base/AA stacks 87.47
B:119 [ARG] D:12 [U] 3.5 87.47
B:119 [ARG] D:13 [A] 2.68 87.47
B:120 [HIS] D:12 [U] 3.07 65.95
B:120 [HIS] D:13 [A] 2.71 65.95
B:130 [ARG] D:14 [U] 3.0 52.38
B:131 [ILE] D:14 [U] 3.9 67.79
B:147 [ARG] D:21 [C] 3.79 39.6
B:148 [SER] D:21 [C] 4.09 99.0
B:149 [GLN] D:21 [C] 3.08 27.65
B:150 [SER] D:21 [C] 3.78 94.69
B:153 [GLN] D:6 [C] 3.22 D:20 [DG] base:SC 72.8
B:153 [GLN] D:7 [U] 3.47 D:19 [A] sugar:SC 72.8
B:154 [HIS] D:6 [C] 4.71 D:20 [DG] 32.62
B:155 [PHE] D:6 [C] 3.53 D:20 [DG] 80.1
B:156 [ARG] D:6 [C] 4.84 D:20 [DG] 62.23
B:174 [THR] D:19 [A] 3.45 D:7 [U] 83.25
B:176 [TYR] D:21 [C] 4.31 95.32

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group59 2XLK_B_D B: Csy4 endoribonuclease, Pseudomonas aeruginosa (genetically engineered) D: Pseudomonas aeruginosa (synthetic) Q02MM2 CRISPR transcript (pre-crRNA) processing endoribonuclease-related ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2XLK_B_D 4AL7_A_B 0.44 0.94 0.92 0.69 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare
2XLK_B_D 4AL5_A_B 0.67 0.96 0.8 0.86 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare
2XLI_A_B 2XLK_B_D 0.81 0.97 0.48 0.95 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare