Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
| 2XLK_B
|
2XLK_D
|
4AL5_A
|
4AL5_B
|
Conserved?
|
|---|---|---|---|---|
| B:114 [ARG] | D:7 [U] | A:114 [ARG] | B:7 [U] | ✔ |
| B:114 [ARG] | D:8 [G] | A:114 [ARG] | B:8 [G] | ✔ |
| B:131 [ILE] | D:14 [U] | A:131 [ILE] | B:14 [U] | ✔ |
| B:148 [SER] | D:21 [C] | A:148 [SER] | B:21 [C] | ✔ |
| B:130 [ARG] | D:14 [U] | A:130 [ARG] | B:14 [U] | ✔ |
| B:29 [HIS] | D:21 [C] | A:29 [HIS] | B:21 [C] | ✔ |
| B:115 [ARG] | D:9 [C] | A:115 [ARG] | B:9 [C] | ✔ |
| B:115 [ARG] | D:10 [C] | A:115 [ARG] | B:10 [C] | ✔ |
| B:115 [ARG] | D:11 [G] | A:115 [ARG] | B:11 [G] | ✔ |
| B:176 [TYR] | D:21 [C] | A:176 [TYR] | B:21 [C] | ✔ |
| B:150 [SER] | D:21 [C] | A:150 [SER] | B:21 [C] | ✔ |
| B:153 [GLN] | D:6 [C] | A:153 [GLN] | B:6 [C] | ✔ |
| B:153 [GLN] | D:7 [U] | A:153 [GLN] | B:7 [U] | ✔ |
| B:112 [LEU] | D:14 [U] | A:112 [LEU] | B:14 [U] | ✔ |
| B:116 [LEU] | D:13 [A] | A:116 [LEU] | B:13 [A] | ✔ |
| B:116 [LEU] | D:14 [U] | A:116 [LEU] | B:14 [U] | ✔ |
| B:102 [ARG] | D:6 [C] | A:102 [ARG] | B:6 [C] | ✔ |
| B:102 [ARG] | D:18 [C] | A:102 [ARG] | B:18 [C] | ✔ |
| B:102 [ARG] | D:19 [A] | A:102 [ARG] | B:19 [A] | ✔ |
| B:154 [HIS] | D:6 [C] | A:154 [HIS] | B:6 [C] | ✔ |
| B:149 [GLN] | D:21 [C] | A:149 [GLN] | B:21 [C] | ✔ |
| B:147 [ARG] | D:21 [C] | A:147 [ARG] | B:21 [C] | ✔ |
| B:111 [ARG] | D:6 [C] | A:111 [ARG] | B:6 [C] | ✔ |
| B:111 [ARG] | D:7 [U] | A:111 [ARG] | B:7 [U] | ✔ |
| B:111 [ARG] | D:8 [G] | A:111 [ARG] | B:8 [G] | ✔ |
| B:104 [GLN] | D:6 [C] | A:104 [GLN] | B:6 [C] | ✔ |
| B:104 [GLN] | D:7 [U] | A:104 [GLN] | B:7 [U] | ✔ |
| B:104 [GLN] | D:8 [G] | A:104 [GLN] | B:8 [G] | ✔ |
| B:104 [GLN] | D:18 [C] | A:104 [GLN] | B:18 [C] | ✔ |
| B:104 [GLN] | D:19 [A] | A:104 [GLN] | B:19 [A] | ✔ |
| B:108 [ASN] | D:6 [C] | A:108 [ASN] | B:6 [C] | ✔ |
| B:108 [ASN] | D:7 [U] | A:108 [ASN] | B:7 [U] | ✔ |
| B:119 [ARG] | D:10 [C] | A:119 [ARG] | B:10 [C] | ✔ |
| B:119 [ARG] | D:11 [G] | A:119 [ARG] | B:11 [G] | ✔ |
| B:119 [ARG] | D:12 [U] | A:119 [ARG] | B:12 [U] | ✔ |
| B:119 [ARG] | D:13 [A] | A:119 [ARG] | B:13 [A] | ✔ |
| B:174 [THR] | D:19 [A] | A:174 [THR] | B:19 [A] | ✔ |
| B:120 [HIS] | D:12 [U] | A:120 [HIS] | B:12 [U] | ✔ |
| B:120 [HIS] | D:13 [A] | A:120 [HIS] | B:13 [A] | ✔ |
| B:156 [ARG] | D:6 [C] | A:156 [ARG] | B:6 [C] | ✔ |
| B:155 [PHE] | D:6 [C] | A:155 [PHE] | B:6 [C] | ✔ |
| B:106 [LYS] | D:11 [G] | A:106 [LYS] | B:11 [G] | ❌ 4AL5_A_B |
| B:106 [LYS] | D:14 [U] | A:106 [LYS] | B:14 [U] | ❌ 4AL5_A_B |
| B:106 [LYS] | D:16 [G] | A:106 [LYS] | B:16 [G] | ❌ 4AL5_B:16 no longer at interface |
| B:106 [LYS] | D:17 [G] | A:106 [LYS] | B:17 [G] | ❌ 4AL5_B:17 no longer at interface |
| B:102 [ARG] | D:20 [DG] | A:102 [ARG] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:104 [GLN] | D:20 [DG] | A:104 [GLN] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:106 [LYS] | D:15 [A] | A:106 [LYS] | B:15 [A] | ❌ 2XLK_D:15 no longer at interface |
| B:147 [ARG] | D:20 [DG] | A:147 [ARG] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:148 [SER] | D:20 [DG] | A:148 [SER] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:149 [GLN] | D:20 [DG] | A:149 [GLN] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:150 [SER] | D:20 [DG] | A:150 [SER] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:151 [THR] | D:20 [DG] | A:151 [THR] | B:20 [G] | ❌ 2XLK_B:151, 2XLK_D:20 no longer at interface |
| B:153 [GLN] | D:20 [DG] | A:153 [GLN] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:155 [PHE] | D:20 [DG] | A:155 [PHE] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:175 [CYS] | D:20 [DG] | A:175 [CYS] | B:20 [G] | ❌ 2XLK_B:175, 2XLK_D:20 no longer at interface |
| B:176 [TYR] | D:20 [DG] | A:176 [TYR] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:29 [HIS] | D:20 [DG] | A:29 [HIS] | B:20 [G] | ❌ 2XLK_D:20 no longer at interface |
| B:118 [ARG] | D:7 [U] | A:118 [ARG] | B:7 [U] | ❌ 4AL5_A:118 no longer at interface |
| B:118 [ARG] | D:8 [G] | A:118 [ARG] | B:8 [G] | ❌ 4AL5_A:118 no longer at interface |
| B:118 [ARG] | D:9 [C] | A:118 [ARG] | B:9 [C] | ❌ 4AL5_A:118 no longer at interface |
| B:107 [SER] | D:6 [C] | A:107 [SER] | B:6 [C] | ❌ 2XLK_B:107 no longer at interface |
| B:132 [PRO] | D:14 [U] | A:132 [PRO] | B:14 [U] | ❌ 2XLK_B:132 no longer at interface |
| B:151 [THR] | D:7 [U] | A:151 [THR] | B:7 [U] | ❌ 2XLK_B:151 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.96 | 0.8 | 0.86 | 0.97 | 0.51 | 0.96 | 0.86 | 0.67 | 0.55 | 0.56 | 0.91 |
Other pairs involving 2XLK_B_D or 4AL5_A_B
Total number of entries: 5
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2XLK_B_D | 4AL7_A_B | 0.44 | 0.94 | 0.92 | 0.69 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLK_B_D | 4AL5_A_B | 0.67 | 0.96 | 0.8 | 0.86 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLI_A_B | 4AL5_A_B | 0.60 | 0.97 | 0.81 | 0.95 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLI_A_B | 2XLK_B_D | 0.81 | 0.97 | 0.48 | 0.95 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 4AL5_A_B | 4AL7_A_B | 0.75 | 0.95 | 1.61 | 0.85 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare |