Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
| 4AL5_A
|
4AL5_B
|
4AL7_A
|
4AL7_B
|
Conserved?
|
|---|---|---|---|---|
| A:148 [SER] | B:20 [G] | A:148 [SER] | B:20 [G] | ✔ |
| A:29 [HIS] | B:20 [G] | A:29 [HIS] | B:20 [G] | ✔ |
| A:176 [TYR] | B:20 [G] | A:176 [TYR] | B:20 [G] | ✔ |
| A:153 [GLN] | B:6 [C] | A:153 [GLN] | B:6 [C] | ✔ |
| A:102 [ARG] | B:6 [C] | A:102 [ARG] | B:6 [C] | ✔ |
| A:102 [ARG] | B:18 [C] | A:102 [ARG] | B:18 [C] | ✔ |
| A:102 [ARG] | B:19 [A] | A:102 [ARG] | B:19 [A] | ✔ |
| A:102 [ARG] | B:20 [G] | A:102 [ARG] | B:20 [G] | ✔ |
| A:154 [HIS] | B:6 [C] | A:154 [HIS] | B:6 [C] | ✔ |
| A:104 [GLN] | B:7 [U] | A:104 [GLN] | B:7 [U] | ✔ |
| A:104 [GLN] | B:18 [C] | A:104 [GLN] | B:18 [C] | ✔ |
| A:104 [GLN] | B:19 [A] | A:104 [GLN] | B:19 [A] | ✔ |
| A:174 [THR] | B:19 [A] | A:174 [THR] | B:19 [A] | ✔ |
| A:175 [CYS] | B:20 [G] | A:175 [CYS] | B:20 [G] | ✔ |
| A:155 [PHE] | B:6 [C] | A:155 [PHE] | B:6 [C] | ✔ |
| A:155 [PHE] | B:20 [G] | A:155 [PHE] | B:20 [G] | ✔ |
| A:151 [THR] | B:7 [U] | A:151 [THR] | B:7 [U] | ❌ 4AL7_A_B |
| A:151 [THR] | B:20 [G] | A:151 [THR] | B:20 [G] | ❌ 4AL7_A_B |
| A:153 [GLN] | B:7 [U] | A:153 [GLN] | B:7 [U] | ❌ 4AL7_A_B |
| A:153 [GLN] | B:20 [G] | A:153 [GLN] | B:20 [G] | ❌ 4AL7_A_B |
| A:104 [GLN] | B:6 [C] | A:104 [GLN] | B:6 [C] | ❌ 4AL7_A_B |
| A:104 [GLN] | B:20 [G] | A:104 [GLN] | B:20 [G] | ❌ 4AL7_A_B |
| A:151 [THR] | B:6 [C] | A:151 [THR] | B:6 [C] | ❌ 4AL5_A_B |
| A:174 [THR] | B:20 [G] | A:174 [THR] | B:20 [G] | ❌ 4AL5_A_B |
| A:104 [GLN] | B:8 [G] | A:104 [GLN] | B:8 [G] | ❌ 4AL7_B:8 no longer at interface |
| A:150 [SER] | B:20 [G] | A:150 [SER] | B:20 [G] | ❌ 4AL7_A:150 no longer at interface |
| A:147 [ARG] | B:20 [G] | A:147 [ARG] | B:20 [G] | ❌ 4AL7_A:147 no longer at interface |
| A:156 [ARG] | B:6 [C] | A:156 [ARG] | B:6 [C] | ❌ 4AL7_A:156 no longer at interface |
| A:180 [LYS] | B:19 [A] | A:180 [LYS] | B:19 [A] | ❌ 4AL5_A:180 no longer at interface |
| A:33 [VAL] | B:20 [G] | A:33 [VAL] | B:20 [G] | ❌ 4AL5_A:33 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.95 | 1.61 | 0.85 | 0.97 | 0.54 | 0.85 | 1.0 | 0.75 | 0.83 | 0.29 | 0.43 |
Other pairs involving 4AL5_A_B or 4AL7_A_B
Total number of entries: 5
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2XLK_B_D | 4AL7_A_B | 0.44 | 0.94 | 0.92 | 0.69 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLK_B_D | 4AL5_A_B | 0.67 | 0.96 | 0.8 | 0.86 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLI_A_B | 4AL5_A_B | 0.60 | 0.97 | 0.81 | 0.95 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLI_A_B | 4AL7_A_B | 0.43 | 0.97 | 0.73 | 0.69 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 4AL5_A_B | 4AL7_A_B | 0.75 | 0.95 | 1.61 | 0.85 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare |