Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 4AL7_A
|
4AL7_B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:29 [HIS] | B:20 [G] | 3.74 | B:6 [C] | 98.85 | ||
| A:33 [VAL] | B:20 [G] | 4.63 | B:6 [C] | 70.06 | ||
| A:102 [ARG] | B:6 [C] | 3.76 | B:20 [G] | 98.24 | ||
| A:102 [ARG] | B:18 [C] | 4.95 | B:8 [G] | 98.24 | ||
| A:102 [ARG] | B:19 [A] | 4.11 | B:7 [U] | 98.24 | ||
| A:102 [ARG] | B:20 [G] | 3.2 | B:6 [C] | base:SC, base:SC | 98.24 | |
| A:104 [GLN] | B:7 [U] | 4.89 | B:19 [A] | 92.42 | ||
| A:104 [GLN] | B:18 [C] | 3.29 | B:8 [G] | base/AA stacks | 92.42 | |
| A:104 [GLN] | B:19 [A] | 2.87 | B:7 [U] | base:SC, base:SC | 92.42 | |
| A:148 [SER] | B:20 [G] | 4.19 | B:6 [C] | 99.0 | ||
| A:151 [THR] | B:6 [C] | 3.82 | B:20 [G] | 81.98 | ||
| A:153 [GLN] | B:6 [C] | 3.32 | B:20 [G] | 77.64 | ||
| A:154 [HIS] | B:6 [C] | 3.71 | B:20 [G] | 23.77 | ||
| A:155 [PHE] | B:6 [C] | 3.05 | B:20 [G] | base/AA stacks | 83.85 | |
| A:155 [PHE] | B:20 [G] | 3.72 | B:6 [C] | base/AA stacks | 83.85 | |
| A:174 [THR] | B:19 [A] | 3.17 | B:7 [U] | 80.45 | ||
| A:174 [THR] | B:20 [G] | 3.6 | B:6 [C] | 80.45 | ||
| A:175 [CYS] | B:20 [G] | 2.87 | B:6 [C] | 58.49 | ||
| A:176 [TYR] | B:20 [G] | 3.6 | B:6 [C] | 94.47 | ||
| A:180 [LYS] | B:19 [A] | 4.13 | B:7 [U] | 33.53 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group59 | 4AL7_A_B | A: Csy4 endoribonuclease, Pseudomonas aeruginosa (genetically engineered) B: Pseudomonas aeruginosa (synthetic) | Q02MM2 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | ✘ |
|
Interologs
Total number of interologs for this interface: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2XLK_B_D | 4AL7_A_B | 0.44 | 0.94 | 0.92 | 0.69 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 2XLI_A_B | 4AL7_A_B | 0.43 | 0.97 | 0.73 | 0.69 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare | |
| 4AL5_A_B | 4AL7_A_B | 0.75 | 0.95 | 1.61 | 0.85 | CRISPR transcript (pre-crRNA) processing endoribonuclease-related | compare |