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All interfaces > All interologs > Interface groups > group6 > 3DD2_H_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3DD2_H
3DD2_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:91 [HIS] B:7 [A] 2.64 94.12
H:93 [ARG] B:8 [A] 3.54 B:21 [UFT] 42.06
H:100 [ASP] B:9 [A] 4.65 B:20 [UFT] 62.33
H:101 [ARG] B:8 [A] 2.76 B:21 [UFT] 85.0
H:101 [ARG] B:9 [A] 3.23 B:20 [UFT] 85.0
H:126 [ARG] B:18 [A] 3.45 46.48
H:131 [GLN] B:14 [A] 3.66 sugar:SC 36.2
H:131 [GLN] B:15 [A] 4.97 B:12 [UFT] 36.2
H:131 [GLN] B:16 [G] 3.09 B:11 [CFL] 36.2
H:132 [ALA] B:14 [A] 4.08 51.8
H:132 [ALA] B:15 [A] 4.64 B:12 [UFT] 51.8
H:163 [VAL] B:15 [A] 4.49 B:12 [UFT] 52.47
H:164 [GLU] B:14 [A] 4.07 45.43
H:164 [GLU] B:15 [A] 3.32 B:12 [UFT] 45.43
H:165 [ARG] B:13 [G] 3.78 53.2
H:165 [ARG] B:14 [A] 4.97 53.2
H:165 [ARG] B:15 [A] 2.78 B:12 [UFT] base/AA stacks 53.2
H:166 [PRO] B:13 [G] 3.39 32.42
H:166 [PRO] B:15 [A] 3.12 B:12 [UFT] 32.42
H:169 [LYS] B:13 [G] 2.77 base:SC 31.49
H:178 [ASP] B:7 [A] 4.54 63.88
H:178 [ASP] B:10 [G] 3.87 B:19 [CFL] 63.88
H:178 [ASP] B:15 [A] 2.97 B:12 [UFT] base:BB 63.88
H:178 [ASP] B:16 [G] 4.48 B:11 [CFL] 63.88
H:179 [ASN] B:7 [A] 2.56 sugar:SC 72.37
H:179 [ASN] B:8 [A] 3.41 B:21 [UFT] 72.37
H:180 [MET] B:15 [A] 4.85 B:12 [UFT] 61.36
H:230 [HIS] B:15 [A] 3.81 B:12 [UFT] 76.01
H:233 [ARG] B:7 [A] 3.19 base/AA stacks 40.78
H:233 [ARG] B:15 [A] 3.2 B:12 [UFT] base/AA stacks 40.78
H:233 [ARG] B:16 [G] 2.91 B:11 [CFL] base:SC, base:SC 40.78
H:234 [LEU] B:7 [A] 3.28 72.03
H:234 [LEU] B:8 [A] 4.17 B:21 [UFT] 72.03
H:235 [LYS] B:7 [A] 4.13 39.49
H:236 [LYS] B:5 [A] 2.85 B:22 [A] 61.87
H:236 [LYS] B:7 [A] 3.57 61.87
H:236 [LYS] B:18 [A] 4.97 61.87
H:237 [TRP] B:7 [A] 3.11 83.89

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group6 3DD2_H_B H: Thrombin heavy chain, Homo sapiens (natural) B: RNA (26-mer) P00734 FMN-binding split barrel ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3DD2_H_B 5DO4_H_A 0.99 0.99 0.16 0.95 compare