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All interfaces > All interologs > Interface groups > group60 > 2ZKO_A_C,D

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2ZKO_A
2ZKO_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:1 [MET] C:18 [C] 4.96 D:23 [G] 92.3
A:2 [ASP] C:17 [U] 3.53 D:24 [A] 79.91
A:2 [ASP] C:18 [C] 4.22 D:23 [G] 79.91
A:5 [THR] C:16 [G] 4.48 D:25 [C] 98.93
A:5 [THR] C:17 [U] 3.2 D:24 [A] 98.93
A:29 [ASP] D:37 [G] 4.23 C:4 [C] 98.45
A:30 [ALA] D:36 [U] 3.66 C:5 [A] 98.86
A:30 [ALA] D:37 [G] 3.6 C:4 [C] 98.86
A:31 [PRO] C:5 [A] 4.31 D:36 [U] 97.55
A:31 [PRO] C:6 [G] 3.66 D:35 [C] 97.55
A:31 [PRO] D:36 [U] 4.25 C:5 [A] 97.55
A:31 [PRO] D:37 [G] 3.69 C:4 [C] 97.55
A:34 [ASP] C:6 [G] 4.31 D:35 [C] 98.45
A:34 [ASP] C:7 [C] 3.65 D:34 [G] 98.45
A:34 [ASP] D:36 [U] 4.46 C:5 [A] 98.45
A:35 [ARG] C:5 [A] 4.45 D:36 [U] 98.43
A:35 [ARG] C:6 [G] 3.14 D:35 [C] sugar:SC 98.43
A:35 [ARG] C:7 [C] 4.0 D:34 [G] 98.43
A:38 [ARG] C:7 [C] 2.76 D:34 [G] 93.6
A:38 [ARG] C:8 [A] 3.35 D:33 [U] 93.6
A:38 [ARG] D:27 [G] 3.43 C:14 [C] 93.6
A:38 [ARG] D:28 [C] 2.83 C:13 [G] 93.6
A:41 [LYS] C:8 [A] 4.43 D:33 [U] 86.99
A:41 [LYS] D:26 [A] 4.5 C:15 [U] 86.99
A:42 [SER] D:26 [A] 2.87 C:15 [U] 90.97
A:42 [SER] D:27 [G] 3.51 C:14 [C] 90.97
A:45 [GLY] D:25 [C] 2.99 C:16 [G] 97.17
A:45 [GLY] D:26 [A] 4.17 C:15 [U] 97.17
A:46 [ARG] D:25 [C] 3.57 C:16 [G] 98.43
A:46 [ARG] D:26 [A] 3.61 C:15 [U] 98.43
A:49 [THR] C:17 [U] 4.52 D:24 [A] 99.0
A:49 [THR] D:24 [A] 4.48 C:17 [U] 99.0
A:49 [THR] D:25 [C] 2.82 C:16 [G] sugar:SC, sugar:SC 99.0
A:50 [LEU] C:17 [U] 4.33 D:24 [A] 97.23

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group60 2ZKO_A_C,D A: Non-structural protein 1, Influenza a virus (genetically engineered) C: N/A D: N/A P03496 S15/NS1 RNA-binding domain ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2ZKO_A_C,D 6SX0_A_C,D 0.94 0.95 0.28 0.29 S15/NS1 RNA-binding domain compare
2ZKO_A_C,D 6ZLC_A_C,D 0.98 0.94 0.72 0.87 S15/NS1 RNA-binding domain compare
2ZKO_A_C,D 6SX2_A_C,D 0.89 0.97 0.47 0.29 S15/NS1 RNA-binding domain compare