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All interfaces > All interologs > Interface groups > group60 > 6SX0_A_C,D

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6SX0_A
6SX0_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:2 [ASP] C:17 [A] 3.69 D:22 [U] 79.73
A:2 [ASP] C:18 [C] 3.97 D:21 [G] 79.73
A:5 [THR] C:16 [U] 4.19 D:23 [A] 98.92
A:5 [THR] C:17 [A] 3.25 D:22 [U] 98.92
A:29 [ASP] D:35 [U] 4.08 C:4 [A] 98.47
A:30 [ALA] D:34 [U] 3.79 C:5 [A] 98.86
A:30 [ALA] D:35 [U] 3.68 C:4 [A] 98.86
A:31 [PRO] C:5 [A] 4.17 D:34 [U] 97.56
A:31 [PRO] C:6 [C] 3.71 D:33 [G] sugar:BB 97.56
A:31 [PRO] D:34 [U] 4.2 C:5 [A] 97.56
A:31 [PRO] D:35 [U] 3.71 C:4 [A] 97.56
A:34 [ASP] C:6 [C] 4.19 D:33 [G] 98.47
A:34 [ASP] C:7 [U] 3.75 D:32 [A] 98.47
A:34 [ASP] D:33 [G] 4.71 C:6 [C] 98.47
A:34 [ASP] D:34 [U] 4.38 C:5 [A] 98.47
A:35 [ARG] C:5 [A] 4.09 D:34 [U] 98.44
A:35 [ARG] C:6 [C] 3.48 D:33 [G] sugar:SC 98.44
A:35 [ARG] C:7 [U] 4.29 D:32 [A] 98.44
A:38 [ARG] C:6 [C] 3.51 D:33 [G] 88.69
A:38 [ARG] C:7 [U] 2.32 D:32 [A] 88.69
A:38 [ARG] C:8 [G] 3.6 D:31 [C] 88.69
A:38 [ARG] D:25 [C] 4.14 C:14 [G] 88.69
A:39 [ASP] D:25 [C] 4.86 C:14 [G] 88.8
A:41 [LYS] D:24 [A] 4.46 C:15 [U] 81.16
A:42 [ALA] D:23 [A] 4.97 C:16 [U] 91.12
A:42 [ALA] D:24 [A] 3.26 C:15 [U] 91.12
A:42 [ALA] D:25 [C] 3.57 C:14 [G] 91.12
A:45 [GLY] D:23 [A] 3.12 C:16 [U] 97.2
A:45 [GLY] D:24 [A] 4.51 C:15 [U] 97.2
A:46 [ARG] D:23 [A] 3.47 C:16 [U] 98.44
A:46 [ARG] D:24 [A] 3.43 C:15 [U] 98.44
A:49 [THR] C:17 [A] 4.42 D:22 [U] 99.0
A:49 [THR] D:22 [U] 4.56 C:17 [A] 99.0
A:49 [THR] D:23 [A] 3.01 C:16 [U] sugar:SC, sugar:SC 99.0
A:50 [LEU] C:17 [A] 4.21 D:22 [U] 97.25

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group60 6SX0_A_C,D A: Non-structural protein 1, Influenza a virus (a/turkey/italy/977/1999(h7n1)) (genetically engineered) C: Synthetic construct (synthetic) D: Synthetic construct (synthetic) Q1PST0 S15/NS1 RNA-binding domain ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6SX0_A_C,D 6SX2_A_C,D 0.97 0.97 0.35 0.87 S15/NS1 RNA-binding domain compare
2ZKO_A_C,D 6SX0_A_C,D 0.94 0.95 0.28 0.29 S15/NS1 RNA-binding domain compare
6SX0_A_C,D 6ZLC_A_C,D 0.96 0.96 0.44 0.29 S15/NS1 RNA-binding domain compare