Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6SX2_A
|
6SX2_C,D
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:1 [SER] | C:17 [A] | 4.69 | D:22 [U] | 76.32 | ||
| A:1 [SER] | C:18 [C] | 3.85 | D:21 [G] | 76.32 | ||
| A:2 [ASP] | C:17 [A] | 3.32 | D:22 [U] | 74.37 | ||
| A:2 [ASP] | C:18 [C] | 3.87 | D:21 [G] | 74.37 | ||
| A:5 [THR] | C:16 [U] | 4.31 | D:23 [A] | 98.9 | ||
| A:5 [THR] | C:17 [A] | 3.24 | D:22 [U] | 98.9 | ||
| A:29 [ASP] | D:35 [U] | 4.11 | C:4 [A] | 98.14 | ||
| A:30 [ALA] | D:34 [U] | 3.75 | C:5 [A] | 98.77 | ||
| A:30 [ALA] | D:35 [U] | 3.67 | C:4 [A] | 98.77 | ||
| A:31 [PRO] | C:5 [A] | 4.09 | D:34 [U] | 96.76 | ||
| A:31 [PRO] | C:6 [C] | 3.59 | D:33 [G] | sugar:BB | 96.76 | |
| A:31 [PRO] | D:34 [U] | 4.14 | C:5 [A] | 96.76 | ||
| A:31 [PRO] | D:35 [U] | 3.67 | C:4 [A] | 96.76 | ||
| A:34 [ASP] | C:6 [C] | 4.16 | D:33 [G] | 98.14 | ||
| A:34 [ASP] | C:7 [U] | 3.54 | D:32 [A] | 98.14 | ||
| A:34 [ASP] | D:33 [G] | 4.65 | C:6 [C] | 98.14 | ||
| A:34 [ASP] | D:34 [U] | 4.41 | C:5 [A] | 98.14 | ||
| A:35 [ARG] | C:5 [A] | 4.02 | D:34 [U] | 98.11 | ||
| A:35 [ARG] | C:6 [C] | 3.38 | D:33 [G] | sugar:SC | 98.11 | |
| A:35 [ARG] | C:7 [U] | 4.12 | D:32 [A] | 98.11 | ||
| A:38 [ALA] | C:7 [U] | 3.59 | D:32 [A] | 91.24 | ||
| A:38 [ALA] | C:8 [G] | 3.52 | D:31 [C] | 91.24 | ||
| A:39 [ASP] | D:25 [C] | 4.6 | C:14 [G] | 92.03 | ||
| A:41 [ALA] | D:24 [A] | 4.42 | C:15 [U] | 81.17 | ||
| A:42 [ALA] | D:24 [A] | 3.3 | C:15 [U] | 88.4 | ||
| A:42 [ALA] | D:25 [C] | 3.63 | C:14 [G] | 88.4 | ||
| A:45 [GLY] | D:23 [A] | 3.31 | C:16 [U] | 96.2 | ||
| A:45 [GLY] | D:24 [A] | 4.33 | C:15 [U] | 96.2 | ||
| A:46 [ARG] | D:23 [A] | 3.53 | C:16 [U] | 98.11 | ||
| A:46 [ARG] | D:24 [A] | 3.4 | C:15 [U] | 98.11 | ||
| A:49 [THR] | C:17 [A] | 4.39 | D:22 [U] | 94.07 | ||
| A:49 [THR] | C:18 [C] | 4.91 | D:21 [G] | 94.07 | ||
| A:49 [THR] | D:22 [U] | 4.57 | C:17 [A] | 94.07 | ||
| A:49 [THR] | D:23 [A] | 3.0 | C:16 [U] | sugar:SC, sugar:SC | 94.07 | |
| A:50 [LEU] | C:17 [A] | 4.27 | D:22 [U] | 96.27 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group60 | 6SX2_A_C,D | A: Non-structural protein 1, Influenza a virus (a/turkey/italy/977/1999(h7n1)) (genetically engineered) C: Synthetic construct (synthetic) D: Synthetic construct (synthetic) | Q1PST0 | S15/NS1 RNA-binding domain | ✘ |
|
Interologs
Total number of interologs for this interface: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2ZKO_A_C,D | 6SX2_A_C,D | 0.89 | 0.97 | 0.47 | 0.29 | S15/NS1 RNA-binding domain | compare | |
| 6SX0_A_C,D | 6SX2_A_C,D | 0.97 | 0.97 | 0.35 | 0.87 | S15/NS1 RNA-binding domain | compare | |
| 6SX2_A_C,D | 6ZLC_A_C,D | 0.90 | 0.99 | 0.57 | 0.29 | S15/NS1 RNA-binding domain | compare |