Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6ZLC_A
|
6ZLC_C,D
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:-3 [GLY] | C:19 [U] | 3.75 | D:20 [A] | 78.07 | ||
| A:-2 [SER] | C:19 [U] | 3.71 | D:20 [A] | 87.27 | ||
| A:-1 [HIS] | C:18 [C] | 3.5 | D:21 [G] | 29.36 | ||
| A:-1 [HIS] | C:19 [U] | 2.88 | D:20 [A] | 29.36 | ||
| A:0 [MET] | C:18 [C] | 4.34 | D:21 [G] | 19.0 | ||
| A:1 [SER] | C:17 [U] | 2.49 | D:22 [A] | sugar:SC | 93.01 | |
| A:1 [SER] | C:18 [C] | 3.27 | D:21 [G] | 93.01 | ||
| A:2 [ASP] | C:17 [U] | 3.17 | D:22 [A] | 81.74 | ||
| A:2 [ASP] | C:18 [C] | 3.7 | D:21 [G] | 81.74 | ||
| A:5 [THR] | C:16 [G] | 4.31 | D:23 [C] | 98.92 | ||
| A:5 [THR] | C:17 [U] | 3.3 | D:22 [A] | 98.92 | ||
| A:29 [ASP] | D:35 [G] | 4.23 | C:4 [C] | 98.3 | ||
| A:30 [ALA] | D:34 [U] | 3.84 | C:5 [A] | 98.82 | ||
| A:30 [ALA] | D:35 [G] | 3.78 | C:4 [C] | 98.82 | ||
| A:31 [PRO] | C:5 [A] | 4.28 | D:34 [U] | 97.14 | ||
| A:31 [PRO] | C:6 [G] | 3.63 | D:33 [C] | sugar:BB | 97.14 | |
| A:31 [PRO] | D:34 [U] | 4.22 | C:5 [A] | 97.14 | ||
| A:31 [PRO] | D:35 [G] | 3.63 | C:4 [C] | 97.14 | ||
| A:34 [ASP] | C:6 [G] | 4.05 | D:33 [C] | 98.3 | ||
| A:34 [ASP] | C:7 [C] | 3.57 | D:32 [G] | 98.3 | ||
| A:34 [ASP] | D:34 [U] | 4.3 | C:5 [A] | 98.3 | ||
| A:35 [ARG] | C:5 [A] | 4.2 | D:34 [U] | 98.27 | ||
| A:35 [ARG] | C:6 [G] | 3.26 | D:33 [C] | sugar:SC | 98.27 | |
| A:35 [ARG] | C:7 [C] | 4.13 | D:32 [G] | 98.27 | ||
| A:38 [ARG] | C:6 [G] | 4.85 | D:33 [C] | 87.58 | ||
| A:38 [ARG] | C:7 [C] | 2.59 | D:32 [G] | 87.58 | ||
| A:38 [ARG] | C:8 [A] | 3.55 | D:31 [U] | 87.58 | ||
| A:38 [ARG] | D:25 [G] | 3.18 | C:14 [C] | 87.58 | ||
| A:38 [ARG] | D:26 [C] | 2.96 | C:13 [G] | 87.58 | ||
| A:39 [ASP] | D:25 [G] | 4.89 | C:14 [C] | 93.14 | ||
| A:42 [ALA] | D:24 [A] | 3.17 | C:15 [U] | 90.38 | ||
| A:42 [ALA] | D:25 [G] | 3.49 | C:14 [C] | 90.38 | ||
| A:45 [GLY] | D:23 [C] | 3.35 | C:16 [G] | 96.67 | ||
| A:45 [GLY] | D:24 [A] | 4.34 | C:15 [U] | 96.67 | ||
| A:46 [ARG] | D:23 [C] | 3.72 | C:16 [G] | 98.27 | ||
| A:46 [ARG] | D:24 [A] | 3.36 | C:15 [U] | 98.27 | ||
| A:49 [THR] | C:17 [U] | 4.52 | D:22 [A] | 99.0 | ||
| A:49 [THR] | C:18 [C] | 4.49 | D:21 [G] | 99.0 | ||
| A:49 [THR] | D:22 [A] | 4.41 | C:17 [U] | 99.0 | ||
| A:49 [THR] | D:23 [C] | 2.81 | C:16 [G] | sugar:SC, sugar:SC | 99.0 | |
| A:50 [LEU] | C:17 [U] | 4.12 | D:22 [A] | 96.75 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group60 | 6ZLC_A_C,D | A: Non-structural protein 1, Influenza a virus (a/turkey/italy/977/1999(h7n1)) (genetically engineered) C: Synthetic construct (synthetic) D: Synthetic construct (synthetic) | Q1PST0 | S15/NS1 RNA-binding domain | ✘ |
|
Interologs
Total number of interologs for this interface: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2ZKO_A_C,D | 6ZLC_A_C,D | 0.98 | 0.94 | 0.72 | 0.87 | S15/NS1 RNA-binding domain | compare | |
| 6SX0_A_C,D | 6ZLC_A_C,D | 0.96 | 0.96 | 0.44 | 0.29 | S15/NS1 RNA-binding domain | compare | |
| 6SX2_A_C,D | 6ZLC_A_C,D | 0.90 | 0.99 | 0.57 | 0.29 | S15/NS1 RNA-binding domain | compare |