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All interfaces > All interologs > Interface groups > group61 > 4Y4O_1T_1A

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Contacts -

4Y4O_1T
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1T:1 [MET] 1A:2886 [G] 3.62 1A:2851 [C] 74.75
1T:2 [ASN] 1A:2885 [C] 2.63 1A:2852 [G] sugar:SC 25.68
1T:2 [ASN] 1A:2886 [G] 3.3 1A:2851 [C] 25.68
1T:3 [ARG] 1A:2885 [C] 3.04 1A:2852 [G] 6.2
1T:3 [ARG] 1A:2886 [G] 2.72 1A:2851 [C] 6.2
1T:4 [GLY] 1A:2885 [C] 3.36 1A:2852 [G] 2.17
1T:4 [GLY] 1A:2886 [G] 4.41 1A:2851 [C] 2.17
1T:5 [ALA] 1A:2885 [C] 4.23 1A:2852 [G] 1.12
1T:23 [ARG] 1A:2859 [U] 2.32 base:SC 49.53
1T:23 [ARG] 1A:2877 [G] 3.16 base/AA stacks 49.53
1T:24 [PRO] 1A:2877 [G] 4.91 56.23
1T:51 [ARG] 1A:2697 [G] 3.08 1A:2737 [C] 72.16
1T:51 [ARG] 1A:2732 [G] 4.7 1A:2882 [G] 72.16
1T:52 [ILE] 1A:2856 [G] 4.31 1A:2880 [C] 56.66
1T:53 [ARG] 1A:2695 [C] 2.52 1A:2693 [C] 57.14
1T:53 [ARG] 1A:2696 [U] 3.31 1A:2738 [A] 57.14
1T:53 [ARG] 1A:2697 [G] 4.96 1A:2737 [C] 57.14
1T:53 [ARG] 1A:2856 [G] 3.96 1A:2880 [C] 57.14
1T:54 [ARG] 1A:2855 [G] 3.28 1A:2881 [C] 72.13
1T:54 [ARG] 1A:2856 [G] 2.89 1A:2880 [C] 72.13
1T:54 [ARG] 1A:2858 [G] 4.59 1A:2878 [A] 72.13
1T:55 [ASN] 1A:2694 [U] 3.72 52.99
1T:55 [ASN] 1A:2695 [C] 3.15 1A:2693 [C] 52.99
1T:55 [ASN] 1A:2854 [G] 4.76 52.99
1T:55 [ASN] 1A:2855 [G] 3.68 1A:2881 [C] 52.99
1T:56 [GLY] 1A:2854 [G] 4.37 41.48
1T:56 [GLY] 1A:2855 [G] 3.08 1A:2881 [C] 41.48
1T:58 [ASN] 1A:2694 [U] 2.58 sugar:SC 51.84
1T:58 [ASN] 1A:2695 [C] 3.5 1A:2693 [C] 51.84
1T:59 [THR] 1A:2855 [G] 4.57 1A:2881 [C] 68.63
1T:60 [THR] 1A:2695 [C] 3.79 1A:2693 [C] 80.54
1T:60 [THR] 1A:2696 [U] 2.58 1A:2738 [A] 80.54
1T:75 [ILE] 1A:2696 [U] 3.44 1A:2738 [A] 62.02
1T:75 [ILE] 1A:2697 [G] 3.41 1A:2737 [C] 62.02
1T:93 [ARG] 1A:1784 [G] 4.64 56.31
1T:93 [ARG] 1A:2859 [U] 4.99 56.31
1T:93 [ARG] 1A:2873 [C] 3.62 1A:2864 [G] 56.31
1T:94 [ALA] 1A:2858 [G] 4.71 1A:2878 [A] 66.78
1T:94 [ALA] 1A:2859 [U] 4.61 66.78
1T:95 [ARG] 1A:1783 [C] 4.79 1A:1787 [G] 84.02
1T:95 [ARG] 1A:1784 [G] 2.75 84.02
1T:95 [ARG] 1A:1785 [C] 3.78 84.02
1T:95 [ARG] 1A:2858 [G] 3.61 1A:2878 [A] 84.02
1T:95 [ARG] 1A:2859 [U] 2.15 84.02
1T:96 [ARG] 1A:1784 [G] 3.36 84.02
1T:96 [ARG] 1A:1785 [C] 2.8 84.02
1T:96 [ARG] 1A:2730 [G] 3.41 1A:2704 [C] sugar:SC 84.02
1T:96 [ARG] 1A:2858 [G] 3.53 1A:2878 [A] 84.02
1T:97 [ALA] 1A:2857 [U] 3.77 1A:2879 [G] 81.51
1T:97 [ALA] 1A:2858 [G] 2.87 1A:2878 [A] 81.51
1T:98 [LYS] 1A:2730 [G] 4.93 1A:2704 [C] 86.27
1T:98 [LYS] 1A:2731 [G] 3.45 1A:2703 [C] 86.27
1T:98 [LYS] 1A:2732 [G] 3.96 1A:2882 [G] 86.27
1T:98 [LYS] 1A:2856 [G] 4.76 1A:2880 [C] 86.27
1T:98 [LYS] 1A:2857 [U] 3.23 1A:2879 [G] 86.27
1T:98 [LYS] 1A:2858 [G] 4.6 1A:2878 [A] 86.27
1T:100 [TYR] 1A:2731 [G] 3.15 1A:2703 [C] 69.54
1T:100 [TYR] 1A:2732 [G] 2.62 1A:2882 [G] 69.54
1T:101 [PHE] 1A:1785 [C] 3.71 74.73
1T:101 [PHE] 1A:2731 [G] 4.93 1A:2703 [C] 74.73
1T:112 [ARG] 1A:1784 [G] 4.95 24.95
1T:112 [ARG] 1A:1786 [A] 4.53 24.95
1T:113 [LYS] 1A:1784 [G] 3.51 49.59
1T:113 [LYS] 1A:1785 [C] 3.13 49.59
1T:113 [LYS] 1A:1786 [A] 2.79 49.59
1T:115 [ARG] 1A:1783 [C] 4.26 1A:1787 [G] 26.36
1T:119 [LYS] 1A:2859 [U] 4.55 42.12
1T:119 [LYS] 1A:2874 [G] 3.31 1A:2863 [C] 42.12
1T:119 [LYS] 1A:2875 [U] 2.88 1A:2862 [G] 42.12
1T:119 [LYS] 1A:2876 [U] 3.74 1A:2861 [A] 42.12
1T:119 [LYS] 1A:2877 [G] 2.23 42.12
1T:123 [GLN] 1A:2877 [G] 4.65 65.87

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group61 4Y4O_1T_1A 1T: 50s ribosomal protein l19, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) P60490 SH3 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1T_1A 6S0Z_N_A 0.84 0.96 2.36 0.45 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1T_1A 7RYG_O_A 0.68 0.96 3.22 0.33 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1T_1A 7K00_o_a 0.74 0.97 1.19 0.36 SH3 Bacterial large subunit ribosomal RNA compare