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All interfaces > All interologs > Interface groups > group61 > 6S0Z_N_A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0Z_N
6S0Z_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
N:4 [HIS] A:2895 [G] 3.22 A:2862 [C] 31.9
N:4 [HIS] A:2896 [A] 3.62 A:2861 [U] 31.9
N:22 [PHE] A:2887 [G] 4.97 57.04
N:23 [ARG] A:2869 [G] 2.54 base:SC, base:SC 53.44
N:23 [ARG] A:2887 [G] 3.17 base/AA stacks 53.44
N:24 [PRO] A:2887 [G] 4.84 63.21
N:51 [LYS] A:2712 [G] 2.85 A:2751 [U] 66.81
N:51 [LYS] A:2746 [G] 4.46 A:2892 [G] 66.81
N:52 [ARG] A:2866 [G] 4.62 A:2890 [C] 63.43
N:53 [ARG] A:2709 [U] 4.92 58.35
N:53 [ARG] A:2710 [C] 2.56 58.35
N:53 [ARG] A:2711 [U] 3.3 A:2752 [A] 58.35
N:53 [ARG] A:2747 [U] 4.18 A:2893 [A] 58.35
N:53 [ARG] A:2866 [G] 3.69 A:2890 [C] 58.35
N:54 [GLY] A:2710 [C] 4.78 68.67
N:54 [GLY] A:2865 [G] 3.85 A:2891 [U] 68.67
N:54 [GLY] A:2866 [G] 3.54 A:2890 [C] 68.67
N:55 [GLY] A:2865 [G] 4.18 A:2891 [U] 50.47
N:56 [GLY] A:2865 [G] 4.71 A:2891 [U] 66.2
N:58 [SER] A:2709 [U] 2.6 sugar:SC 62.58
N:58 [SER] A:2710 [C] 3.83 62.58
N:60 [THR] A:2710 [C] 3.9 78.01
N:60 [THR] A:2711 [U] 3.26 A:2752 [A] 78.01
N:75 [THR] A:2711 [U] 4.67 A:2752 [A] 55.93
N:93 [LYS] A:2882 [A] 3.51 A:2875 [U] 60.8
N:93 [LYS] A:2883 [U] 2.48 A:2874 [A] 60.8
N:94 [VAL] A:2869 [G] 4.61 66.46
N:95 [ARG] A:1779 [C] 4.67 A:1783 [G] 82.16
N:95 [ARG] A:1780 [G] 3.18 82.16
N:95 [ARG] A:1781 [C] 4.38 82.16
N:95 [ARG] A:2868 [G] 4.18 A:2888 [A] 82.16
N:95 [ARG] A:2869 [G] 3.09 82.16
N:96 [ARG] A:1780 [G] 3.56 87.55
N:96 [ARG] A:1781 [C] 2.22 87.55
N:96 [ARG] A:2720 [A] 4.9 A:2743 [U] 87.55
N:96 [ARG] A:2744 [G] 3.54 A:2719 [C] 87.55
N:96 [ARG] A:2868 [G] 3.76 A:2888 [A] 87.55
N:97 [ALA] A:2867 [U] 4.28 A:2889 [G] 82.36
N:97 [ALA] A:2868 [G] 2.74 A:2888 [A] 82.36
N:98 [LYS] A:2744 [G] 4.87 A:2719 [C] 89.99
N:98 [LYS] A:2745 [G] 3.68 A:2718 [C] 89.99
N:98 [LYS] A:2746 [G] 3.84 A:2892 [G] 89.99
N:98 [LYS] A:2867 [U] 3.04 A:2889 [G] 89.99
N:98 [LYS] A:2868 [G] 4.31 A:2888 [A] 89.99
N:100 [TYR] A:2745 [G] 3.31 A:2718 [C] 69.1
N:100 [TYR] A:2746 [G] 3.17 A:2892 [G] 69.1
N:101 [TYR] A:1781 [C] 3.78 74.79
N:103 [ARG] A:2712 [G] 4.86 A:2751 [U] 96.31

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group61 6S0Z_N_A N: 50s ribosomal protein l19, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) A0A077UVB6 SH3 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_N_A 7K00_o_a 0.75 0.97 1.93 0.36 SH3 Bacterial large subunit ribosomal RNA compare
6S0Z_N_A 7RYG_O_A 0.64 0.98 2.05 0.39 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1T_1A 6S0Z_N_A 0.84 0.96 2.36 0.45 SH3 Bacterial large subunit ribosomal RNA compare